Parmigiani G - Search Results

1

Web-based tissue microarray image data analysis: initial validation testing through prostate cancer Gleason grading.

Bova GS, Parmigiani G, Epstein JI, Wheeler T, Mucci NR, Rubin MA. Bova GS, et al. Among authors: parmigiani g. Hum Pathol. 2001 Apr;32(4):417-27. doi: 10.1053/hupa.2001.23517. Hum Pathol. 2001. PMID: 11331959 Clinical Trial.

2

Pre-processing Agilent microarray data.

Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L. Zahurak M, et al. Among authors: parmigiani g. BMC Bioinformatics. 2007 May 1;8:142. doi: 10.1186/1471-2105-8-142. BMC Bioinformatics. 2007. PMID: 17472750 Free PMC article.

3

Gene expression variation in the adult human retina.

Chowers I, Liu D, Farkas RH, Gunatilaka TL, Hackam AS, Bernstein SL, Campochiaro PA, Parmigiani G, Zack DJ. Chowers I, et al. Among authors: parmigiani g. Hum Mol Genet. 2003 Nov 15;12(22):2881-93. doi: 10.1093/hmg/ddg326. Epub 2003 Sep 30. Hum Mol Genet. 2003. PMID: 14519682

4

Statistical modeling and visualization of molecular profiles in cancer.

Scharpf R, Garrett ES, Hu J, Parmigiani G. Scharpf R, et al. Among authors: parmigiani g. Biotechniques. 2003 Mar;Suppl:22-9. Biotechniques. 2003. PMID: 12664681

5

A comprehensive approach toward novel serum biomarkers for benign prostatic hyperplasia: the MPSA Consortium.

Mullins C, Lucia MS, Hayward SW, Lee JY, Levitt JM, Lin VK, Liu BC, Chinnaiyan AM, Rubin MA, Slawin K, Star RA, Getzenberg RH; MPSA Consortium. Mullins C, et al. J Urol. 2008 Apr;179(4):1243-56. doi: 10.1016/j.juro.2007.11.049. Epub 2008 Feb 20. J Urol. 2008. PMID: 18280515 Free PMC article. Review.

6

A multiple-loop, double-cube microarray design applied to prostate cancer cell lines with variable sensitivity to histone deacetylase inhibitors.

Kortenhorst MS, Zahurak M, Shabbeer S, Kachhap S, Galloway N, Parmigiani G, Verheul HM, Carducci MA. Kortenhorst MS, et al. Among authors: parmigiani g. Clin Cancer Res. 2008 Nov 1;14(21):6886-94. doi: 10.1158/1078-0432.CCR-08-0119. Clin Cancer Res. 2008. PMID: 18980983 Free PMC article.

7

Patient-oriented gene set analysis for cancer mutation data.

Boca SM, Kinzler KW, Velculescu VE, Vogelstein B, Parmigiani G. Boca SM, et al. Among authors: parmigiani g. Genome Biol. 2010;11(11):R112. doi: 10.1186/gb-2010-11-11-r112. Epub 2010 Nov 23. Genome Biol. 2010. PMID: 21092299 Free PMC article.

8

When should one subtract background fluorescence in 2-color microarrays?

Scharpf RB, Iacobuzio-Donahue CA, Sneddon JB, Parmigiani G. Scharpf RB, et al. Among authors: parmigiani g. Biostatistics. 2007 Oct;8(4):695-707. doi: 10.1093/biostatistics/kxl041. Epub 2006 Dec 12. Biostatistics. 2007. PMID: 17164465

9

Extent, impact, and mitigation of batch effects in tumor biomarker studies using tissue microarrays.

Stopsack KH, Tyekucheva S, Wang M, Gerke TA, Vaselkiv JB, Penney KL, Kantoff PW, Finn SP, Fiorentino M, Loda M, Lotan TL, Parmigiani G, Mucci LA. Stopsack KH, et al. Among authors: parmigiani g. Elife. 2021 Dec 23;10:e71265. doi: 10.7554/eLife.71265. Elife. 2021. PMID: 34939926 Free PMC article.

10

Statistical methods for identifying differentially expressed gene combinations.

Ho YY, Cope L, Dettling M, Parmigiani G. Ho YY, et al. Among authors: parmigiani g. Methods Mol Biol. 2007;408:171-91. doi: 10.1007/978-1-59745-547-3_10. Methods Mol Biol. 2007. PMID: 18314583

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