Shasha DE - Search Results

1

cis element/transcription factor analysis (cis/TF): a method for discovering transcription factor/cis element relationships.

Birnbaum K, Benfey PN, Shasha DE. Birnbaum K, et al. Among authors: shasha de. Genome Res. 2001 Sep;11(9):1567-73. doi: 10.1101/gr.158301. Genome Res. 2001. PMID: 11544201 Free PMC article.

2

Plant systems biology: lessons from a fruitful collaboration.

Shasha DE. Shasha DE. Plant Physiol. 2003 Jun;132(2):415-6. doi: 10.1104/pp.102.019588. Plant Physiol. 2003. PMID: 12805571 Free PMC article. No abstract available.

3

Trait-to-gene: a computational method for predicting the function of uncharacterized genes.

Levesque M, Shasha D, Kim W, Surette MG, Benfey PN. Levesque M, et al. Curr Biol. 2003 Jan 21;13(2):129-33. doi: 10.1016/s0960-9822(03)00009-5. Curr Biol. 2003. PMID: 12546786 Free article.

4

A gene expression map of the Arabidopsis root.

Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN. Birnbaum K, et al. Among authors: shasha de. Science. 2003 Dec 12;302(5652):1956-60. doi: 10.1126/science.1090022. Science. 2003. PMID: 14671301

5

Predicting genome-wide redundancy using machine learning.

Chen HW, Bandyopadhyay S, Shasha DE, Birnbaum KD. Chen HW, et al. Among authors: shasha de. BMC Evol Biol. 2010 Nov 18;10:357. doi: 10.1186/1471-2148-10-357. BMC Evol Biol. 2010. PMID: 21087504 Free PMC article.

6

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM. Krouk G, et al. Among authors: shasha de. Genome Biol. 2010;11(12):R123. doi: 10.1186/gb-2010-11-12-r123. Epub 2010 Dec 23. Genome Biol. 2010. PMID: 21182762 Free PMC article.

7

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM. Ruffel S, et al. Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18524-9. doi: 10.1073/pnas.1108684108. Epub 2011 Oct 24. Proc Natl Acad Sci U S A. 2011. PMID: 22025711 Free PMC article.

8

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization.

Roszak P, Heo JO, Blob B, Toyokura K, Sugiyama Y, de Luis Balaguer MA, Lau WWY, Hamey F, Cirrone J, Madej E, Bouatta AM, Wang X, Guichard M, Ursache R, Tavares H, Verstaen K, Wendrich J, Melnyk CW, Oda Y, Shasha D, Ahnert SE, Saeys Y, De Rybel B, Heidstra R, Scheres B, Grossmann G, Mähönen AP, Denninger P, Göttgens B, Sozzani R, Birnbaum KD, Helariutta Y. Roszak P, et al. Among authors: de luis balaguer ma, shasha d, de rybel b. Science. 2021 Dec 24;374(6575):eaba5531. doi: 10.1126/science.aba5531. Epub 2021 Dec 24. Science. 2021. PMID: 34941412 Free PMC article.

9

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis.

Gutiérrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM. Gutiérrez RA, et al. Among authors: shasha de. Genome Biol. 2007;8(1):R7. doi: 10.1186/gb-2007-8-1-r7. Genome Biol. 2007. PMID: 17217541 Free PMC article.

10

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.

Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM. Varala K, et al. Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6494-6499. doi: 10.1073/pnas.1721487115. Epub 2018 May 16. Proc Natl Acad Sci U S A. 2018. PMID: 29769331 Free PMC article.

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