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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Barretina J, Caponigro G, Stransky N, Venkatesan K, Margolin AA, Kim S, Wilson CJ, Lehár J, Kryukov GV, Sonkin D, Reddy A, Liu M, Murray L, Berger MF, Monahan JE, Morais P, Meltzer J, Korejwa A, Jané-Valbuena J, Mapa FA, Thibault J, Bric-Furlong E, Raman P, Shipway A, Engels IH, Cheng J, Yu GK, Yu J, Aspesi P Jr, de Silva M, Jagtap K, Jones MD, Wang L, Hatton C, Palescandolo E, Gupta S, Mahan S, Sougnez C, Onofrio RC, Liefeld T, MacConaill L, Winckler W, Reich M, Li N, Mesirov JP, Gabriel SB, Getz G, Ardlie K, Chan V, Myer VE, Weber BL, Porter J, Warmuth M, Finan P, Harris JL, Meyerson M, Golub TR, Morrissey MP, Sellers WR, Schlegel R, Garraway LA. Barretina J, et al. Among authors: reich m. Nature. 2012 Mar 28;483(7391):603-7. doi: 10.1038/nature11003. Nature. 2012. PMID: 22460905 Free PMC article.
Multiclass cancer diagnosis using tumor gene expression signatures.
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang CH, Angelo M, Ladd C, Reich M, Latulippe E, Mesirov JP, Poggio T, Gerald W, Loda M, Lander ES, Golub TR. Ramaswamy S, et al. Among authors: reich m. Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):15149-54. doi: 10.1073/pnas.211566398. Epub 2001 Dec 11. Proc Natl Acad Sci U S A. 2001. PMID: 11742071 Free PMC article.
Using GenePattern for gene expression analysis.
Kuehn H, Liberzon A, Reich M, Mesirov JP. Kuehn H, et al. Among authors: reich m. Curr Protoc Bioinformatics. 2008 Jun;Chapter 7:7.12.1-7.12.39. doi: 10.1002/0471250953.bi0712s22. Curr Protoc Bioinformatics. 2008. PMID: 18551415 Free PMC article. Review.
Gene expression in fixed tissues and outcome in hepatocellular carcinoma.
Hoshida Y, Villanueva A, Kobayashi M, Peix J, Chiang DY, Camargo A, Gupta S, Moore J, Wrobel MJ, Lerner J, Reich M, Chan JA, Glickman JN, Ikeda K, Hashimoto M, Watanabe G, Daidone MG, Roayaie S, Schwartz M, Thung S, Salvesen HB, Gabriel S, Mazzaferro V, Bruix J, Friedman SL, Kumada H, Llovet JM, Golub TR. Hoshida Y, et al. Among authors: reich m. N Engl J Med. 2008 Nov 6;359(19):1995-2004. doi: 10.1056/NEJMoa0804525. Epub 2008 Oct 15. N Engl J Med. 2008. PMID: 18923165 Free PMC article.
GeneCruiser: a web service for the annotation of microarray data.
Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP. Liefeld T, et al. Among authors: reich m. Bioinformatics. 2005 Sep 15;21(18):3681-2. doi: 10.1093/bioinformatics/bti587. Epub 2005 Jul 19. Bioinformatics. 2005. PMID: 16030072
GenePattern 2.0.
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. Reich M, et al. Nat Genet. 2006 May;38(5):500-1. doi: 10.1038/ng0506-500. Nat Genet. 2006. PMID: 16642009 No abstract available.
The landscape of somatic copy-number alteration across human cancers.
Beroukhim R, Mermel CH, Porter D, Wei G, Raychaudhuri S, Donovan J, Barretina J, Boehm JS, Dobson J, Urashima M, Mc Henry KT, Pinchback RM, Ligon AH, Cho YJ, Haery L, Greulich H, Reich M, Winckler W, Lawrence MS, Weir BA, Tanaka KE, Chiang DY, Bass AJ, Loo A, Hoffman C, Prensner J, Liefeld T, Gao Q, Yecies D, Signoretti S, Maher E, Kaye FJ, Sasaki H, Tepper JE, Fletcher JA, Tabernero J, Baselga J, Tsao MS, Demichelis F, Rubin MA, Janne PA, Daly MJ, Nucera C, Levine RL, Ebert BL, Gabriel S, Rustgi AK, Antonescu CR, Ladanyi M, Letai A, Garraway LA, Loda M, Beer DG, True LD, Okamoto A, Pomeroy SL, Singer S, Golub TR, Lander ES, Getz G, Sellers WR, Meyerson M. Beroukhim R, et al. Among authors: reich m. Nature. 2010 Feb 18;463(7283):899-905. doi: 10.1038/nature08822. Nature. 2010. PMID: 20164920 Free PMC article.
733 results