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Conformational analysis of the NMDA receptor antagonist (1S,2R)-1-phenyl-2-[(S)-1-aminopropyl]-N,N-diethylcyclopropanecarboxamide (PPDC) designed by a novel conformational restriction method based on the structural feature of cyclopropane ring.
Ono S, Ogawa K, Yamashita K, Yamamoto T, Kazuta Y, Matsuda A, Shuto S. Ono S, et al. Among authors: yamamoto t. Chem Pharm Bull (Tokyo). 2002 Jul;50(7):966-8. doi: 10.1248/cpb.50.966. Chem Pharm Bull (Tokyo). 2002. PMID: 12130856 Free article.
The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.
Juan EC, Hoque MM, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Sekiguchi T, Takénaka A. Juan EC, et al. Among authors: yamamoto t. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Nov 1;63(Pt 11):900-7. doi: 10.1107/S1744309107041012. Epub 2007 Oct 20. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007. PMID: 18007037 Free PMC article.
Structures of Arthrobacter globiformis urate oxidase-ligand complexes.
Juan EC, Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takénaka A. Juan EC, et al. Among authors: yamamoto t. Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):815-22. doi: 10.1107/S0907444908013590. Epub 2008 Jul 17. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18645230
The structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family.
Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takénaka A. Hoque MM, et al. Among authors: yamamoto t. Acta Crystallogr D Biol Crystallogr. 2008 May;64(Pt 5):496-505. doi: 10.1107/S0907444908004009. Epub 2008 Apr 19. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18453685
Structure of D-3-hydroxybutyrate dehydrogenase prepared in the presence of the substrate D-3-hydroxybutyrate and NAD+.
Hoque MM, Shimizu S, Juan EC, Sato Y, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Amano H, Sekiguchi T, Tsunoda M, Takénaka A. Hoque MM, et al. Among authors: yamamoto t. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt 4):331-5. doi: 10.1107/S1744309109008537. Epub 2009 Mar 26. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009. PMID: 19342772 Free PMC article.
Raman signatures of type A and B influenza viruses: molecular origin of the "catch and kill" inactivation mechanism mediated by micrometric silicon nitride powder.
Pezzotti G, Yasukochi Y, Ohgitani E, Nakashio M, Shin-Ya M, Adachi T, Yamamoto T, Ikegami S, Zhu W, Higasa K, Okuma K, Mazda O. Pezzotti G, et al. Among authors: yamamoto t. RSC Chem Biol. 2025 Jan 22. doi: 10.1039/d4cb00237g. Online ahead of print. RSC Chem Biol. 2025. PMID: 39850321 Free PMC article.
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