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Genome sequence of the human malaria parasite Plasmodium falciparum.
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B. Gardner MJ, et al. Among authors: mungall c. Nature. 2002 Oct 3;419(6906):498-511. doi: 10.1038/nature01097. Nature. 2002. PMID: 12368864 Free PMC article.
AmiGO: online access to ontology and annotation data.
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group. Carbon S, et al. Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25. Bioinformatics. 2009. PMID: 19033274 Free PMC article.
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.
Giglio M, Tauber R, Nadendla S, Munro J, Olley D, Ball S, Mitraka E, Schriml LM, Gaudet P, Hobbs ET, Erill I, Siegele DA, Hu JC, Mungall C, Chibucos MC. Giglio M, et al. Among authors: mungall c. Nucleic Acids Res. 2019 Jan 8;47(D1):D1186-D1194. doi: 10.1093/nar/gky1036. Nucleic Acids Res. 2019. PMID: 30407590 Free PMC article.
Survey-based naming conventions for use in OBO Foundry ontology development.
Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J, Mungall C, Taylor CF, Rocca-Serra P, Sansone SA. Schober D, et al. Among authors: mungall c. BMC Bioinformatics. 2009 Apr 27;10:125. doi: 10.1186/1471-2105-10-125. BMC Bioinformatics. 2009. PMID: 19397794 Free PMC article.
Ontology engineering.
Alterovitz G, Xiang M, Hill DP, Lomax J, Liu J, Cherkassky M, Dreyfuss J, Mungall C, Harris MA, Dolan ME, Blake JA, Ramoni MF. Alterovitz G, et al. Among authors: mungall c. Nat Biotechnol. 2010 Feb;28(2):128-30. doi: 10.1038/nbt0210-128. Nat Biotechnol. 2010. PMID: 20139945 Free PMC article.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Cooper L, Meier A, Laporte MA, Elser JL, Mungall C, Sinn BT, Cavaliere D, Carbon S, Dunn NA, Smith B, Qu B, Preece J, Zhang E, Todorovic S, Gkoutos G, Doonan JH, Stevenson DW, Arnaud E, Jaiswal P. Cooper L, et al. Among authors: mungall c. Nucleic Acids Res. 2018 Jan 4;46(D1):D1168-D1180. doi: 10.1093/nar/gkx1152. Nucleic Acids Res. 2018. PMID: 29186578 Free PMC article.
Relations in biomedical ontologies.
Smith B, Ceusters W, Klagges B, Köhler J, Kumar A, Lomax J, Mungall C, Neuhaus F, Rector AL, Rosse C. Smith B, et al. Among authors: mungall c. Genome Biol. 2005;6(5):R46. doi: 10.1186/gb-2005-6-5-r46. Epub 2005 Apr 28. Genome Biol. 2005. PMID: 15892874 Free PMC article.
The influence of disease categories on gene candidate predictions from model organism phenotypes.
Oellrich A, Koehler S, Washington N; Sanger Mouse Genetic Project; Mungall C, Lewis S, Haendel M, Robinson PN, Smedley D. Oellrich A, et al. Among authors: mungall c. J Biomed Semantics. 2014 Jun 3;5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S4. doi: 10.1186/2041-1480-5-S1-S4. eCollection 2014. J Biomed Semantics. 2014. PMID: 25093073 Free PMC article.
219 results