Saito R - Search Results

1

Comprehensive sequence analysis of translation termination sites in various eukaryotes.

Ozawa Y, Hanaoka S, Saito R, Washio T, Nakano S, Shinagawa A, Itoh M, Shibata K, Carninci P, Konno H, Kawai J, Hayashizaki Y, Tomita M. Ozawa Y, et al. Among authors: saito r. Gene. 2002 Oct 30;300(1-2):79-87. doi: 10.1016/s0378-1119(02)01042-9. Gene. 2002. PMID: 12468089

2

Computer analyses of complete genomes suggest that some archaebacteria employ both eukaryotic and eubacterial mechanisms in translation initiation.

Saito R, Tomita M. Saito R, et al. Gene. 1999 Sep 30;238(1):79-83. doi: 10.1016/s0378-1119(99)00254-1. Gene. 1999. PMID: 10570986

In eubacterial genomes, on the other hand, ribosome binds to the Shine-Dalgarno (SD) sequence at once without mRNA scanning, and the characteristic patterns of ATG triplet depletion were not observed (Saito, R., Tomita, M., 1999. On negative selection against ATG tr …

In eubacterial genomes, on the other hand, ribosome binds to the Shine-Dalgarno (SD) sequence at once without mRNA scanning, and the charact …

3

Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes.

Sakai H, Washio T, Saito R, Shinagawa A, Itoh M, Shibata K, Carninci P, Konno H, Kawai J, Hayashizaki Y, Tomita M. Sakai H, et al. Among authors: saito r. Gene. 2001 Oct 3;276(1-2):101-5. doi: 10.1016/s0378-1119(01)00671-0. Gene. 2001. PMID: 11591476

4

On biased distribution of introns in various eukaryotes.

Sakurai A, Fujimori S, Kochiwa H, Kitamura-Abe S, Washio T, Saito R, Carninci P, Hayashizaki Y, Tomita M. Sakurai A, et al. Among authors: saito r. Gene. 2002 Oct 30;300(1-2):89-95. doi: 10.1016/s0378-1119(02)01035-1. Gene. 2002. PMID: 12468090

5

Comparative study of translation termination sites and release factors (RF1 and RF2) in procaryotes.

Ozawa Y, Saito R, Washio T, Tomita M. Ozawa Y, et al. Among authors: saito r. J Mol Evol. 2003 Jun;56(6):665-72. doi: 10.1007/s00239-002-2435-9. J Mol Evol. 2003. PMID: 12911030

6

On negative selection against ATG triplets near start codons in eukaryotic and prokaryotic genomes.

Saito R, Tomita M. Saito R, et al. J Mol Evol. 1999 Feb;48(2):213-7. doi: 10.1007/pl00006460. J Mol Evol. 1999. PMID: 9929390

7

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes.

Osada Y, Saito R, Tomita M. Osada Y, et al. Among authors: saito r. Bioinformatics. 1999 Jul-Aug;15(7-8):578-81. doi: 10.1093/bioinformatics/15.7.578. Bioinformatics. 1999. PMID: 10487865

8

Characteristic sequence pattern in the 5- to 20-bp upstream region of primate Alu elements.

Toda Y, Saito R, Tomita M. Toda Y, et al. Among authors: saito r. J Mol Evol. 2000 Mar;50(3):232-7. doi: 10.1007/s002399910026. J Mol Evol. 2000. PMID: 10754065

9

Computer analysis of potential stem structures of rRNA operons in various procaryote genomes.

Saito R, Ozawa Y, Kuzuno N, Tomita M. Saito R, et al. Gene. 2000 Dec 23;259(1-2):217-22. doi: 10.1016/s0378-1119(00)00429-7. Gene. 2000. PMID: 11163979

10

Correlation between Shine--Dalgarno sequence conservation and codon usage of bacterial genes.

Sakai H, Imamura C, Osada Y, Saito R, Washio T, Tomita M. Sakai H, et al. Among authors: saito r. J Mol Evol. 2001 Feb;52(2):164-70. doi: 10.1007/s002390010145. J Mol Evol. 2001. PMID: 11231896

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