Sefcikova J - Search Results

1

Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5' substrate sequence.

Jeong S, Sefcikova J, Tinsley RA, Rueda D, Walter NG. Jeong S, et al. Among authors: sefcikova j. Biochemistry. 2003 Jul 1;42(25):7727-40. doi: 10.1021/bi034627g. Biochemistry. 2003. PMID: 12820882

2

Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme.

Sefcikova J, Krasovska MV, Spacková N, Sponer J, Walter NG. Sefcikova J, et al. Biopolymers. 2007 Apr 5-15;85(5-6):392-406. doi: 10.1002/bip.20693. Biopolymers. 2007. PMID: 17253610 Free article.

3

The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis.

Sefcikova J, Krasovska MV, Sponer J, Walter NG. Sefcikova J, et al. Nucleic Acids Res. 2007;35(6):1933-46. doi: 10.1093/nar/gkl1104. Epub 2007 Mar 2. Nucleic Acids Res. 2007. PMID: 17337436 Free PMC article.

4

Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations.

Krasovska MV, Sefcikova J, Spacková N, Sponer J, Walter NG. Krasovska MV, et al. Among authors: sefcikova j. J Mol Biol. 2005 Aug 26;351(4):731-48. doi: 10.1016/j.jmb.2005.06.016. J Mol Biol. 2005. PMID: 16045932

5

Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme.

Krasovska MV, Sefcikova J, Réblová K, Schneider B, Walter NG, Sponer J. Krasovska MV, et al. Among authors: sefcikova j. Biophys J. 2006 Jul 15;91(2):626-38. doi: 10.1529/biophysj.105.079368. Epub 2006 Apr 14. Biophys J. 2006. PMID: 16617077 Free PMC article.

6

Cas6 processes tight and relaxed repeat RNA via multiple mechanisms: A hypothesis.

Sefcikova J, Roth M, Yu G, Li H. Sefcikova J, et al. Bioessays. 2017 Jun;39(6):10.1002/bies.201700019. doi: 10.1002/bies.201700019. Epub 2017 May 11. Bioessays. 2017. PMID: 28493337 Free PMC article. Review.

7

Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.

Han GW, Ko J, Farr CL, Deller MC, Xu Q, Chiu HJ, Miller MD, Sefcikova J, Somarowthu S, Beuning PJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Ondrechen MJ. Han GW, et al. Among authors: sefcikova j. Proteins. 2011 Jul;79(7):2146-60. doi: 10.1002/prot.23035. Epub 2011 May 2. Proteins. 2011. PMID: 21538547 Free PMC article.

8

Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit.

McCauley MJ, Shokri L, Sefcikova J, Venclovas C, Beuning PJ, Williams MC. McCauley MJ, et al. Among authors: sefcikova j. ACS Chem Biol. 2008 Sep 19;3(9):577-87. doi: 10.1021/cb8001107. Epub 2008 Jul 25. ACS Chem Biol. 2008. PMID: 18652472 Free PMC article.

9

Mammalian DNA Polymerase Kappa Activity and Specificity.

Stern HR, Sefcikova J, Chaparro VE, Beuning PJ. Stern HR, et al. Among authors: sefcikova j. Molecules. 2019 Aug 1;24(15):2805. doi: 10.3390/molecules24152805. Molecules. 2019. PMID: 31374881 Free PMC article. Review.

10

Point mutations in Escherichia coli DNA pol V that confer resistance to non-cognate DNA damage also alter protein-protein interactions.

Hawver LA, Tehrani M, Antczak NM, Kania D, Muser S, Sefcikova J, Beuning PJ. Hawver LA, et al. Among authors: sefcikova j. Mutat Res. 2015 Oct;780:1-14. doi: 10.1016/j.mrfmmm.2015.07.003. Epub 2015 Jul 13. Mutat Res. 2015. PMID: 26218456

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