DeSantis TZ - Search Results

1

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.

DeSantis TZ, Dubosarskiy I, Murray SR, Andersen GL. DeSantis TZ, et al. Bioinformatics. 2003 Aug 12;19(12):1461-8. doi: 10.1093/bioinformatics/btg200. Bioinformatics. 2003. PMID: 12912825

2

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.

Dalevi D, Desantis TZ, Fredslund J, Andersen GL, Markowitz VM, Hugenholtz P. Dalevi D, et al. Among authors: desantis tz. BMC Bioinformatics. 2007 Oct 18;8:402. doi: 10.1186/1471-2105-8-402. BMC Bioinformatics. 2007. PMID: 17949484 Free PMC article.

3

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL. DeSantis TZ Jr, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W394-9. doi: 10.1093/nar/gkl244. Nucleic Acids Res. 2006. PMID: 16845035 Free PMC article.

4

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.

DeSantis TZ, Stone CE, Murray SR, Moberg JP, Andersen GL. DeSantis TZ, et al. FEMS Microbiol Lett. 2005 Apr 15;245(2):271-8. doi: 10.1016/j.femsle.2005.03.016. FEMS Microbiol Lett. 2005. PMID: 15837382

5

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. DeSantis TZ, et al. Microb Ecol. 2007 Apr;53(3):371-83. doi: 10.1007/s00248-006-9134-9. Epub 2007 Mar 2. Microb Ecol. 2007. PMID: 17334858

6

Selective progressive response of soil microbial community to wild oat roots.

DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. DeAngelis KM, et al. Among authors: desantis tz. ISME J. 2009 Feb;3(2):168-78. doi: 10.1038/ismej.2008.103. Epub 2008 Nov 13. ISME J. 2009. PMID: 19005498 Free article.

7

PyNAST: a flexible tool for aligning sequences to a template alignment.

Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. Caporaso JG, et al. Among authors: desantis tz. Bioinformatics. 2010 Jan 15;26(2):266-7. doi: 10.1093/bioinformatics/btp636. Epub 2009 Nov 13. Bioinformatics. 2010. PMID: 19914921 Free PMC article.

8

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology.

Wilson WJ, Strout CL, DeSantis TZ, Stilwell JL, Carrano AV, Andersen GL. Wilson WJ, et al. Among authors: desantis tz. Mol Cell Probes. 2002 Apr;16(2):119-27. doi: 10.1006/mcpr.2001.0397. Mol Cell Probes. 2002. PMID: 12030762

9

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. DeSantis TZ, et al. Appl Environ Microbiol. 2006 Jul;72(7):5069-72. doi: 10.1128/AEM.03006-05. Appl Environ Microbiol. 2006. PMID: 16820507 Free PMC article.

10

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation.

Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK. Brodie EL, et al. Among authors: desantis tz. Appl Environ Microbiol. 2006 Sep;72(9):6288-98. doi: 10.1128/AEM.00246-06. Appl Environ Microbiol. 2006. PMID: 16957256 Free PMC article.

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