Bolshoy A - Search Results

1

Dinucleosome DNA of human K562 cells: experimental and computational characterizations.

Kato M, Onishi Y, Wada-Kiyama Y, Abe T, Ikemura T, Kogan S, Bolshoy A, Trifonov EN, Kiyama R. Kato M, et al. Among authors: bolshoy a. J Mol Biol. 2003 Sep 5;332(1):111-25. doi: 10.1016/s0022-2836(03)00838-6. J Mol Biol. 2003. PMID: 12946351

2

Sequence periodicity of Escherichia coli is concentrated in intergenic regions.

Hosid S, Trifonov EN, Bolshoy A. Hosid S, et al. Among authors: bolshoy a. BMC Mol Biol. 2004 Aug 26;5:14. doi: 10.1186/1471-2199-5-14. BMC Mol Biol. 2004. PMID: 15333140 Free PMC article.

3

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences.

Ioshikhes I, Bolshoy A, Derenshteyn K, Borodovsky M, Trifonov EN. Ioshikhes I, et al. Among authors: bolshoy a. J Mol Biol. 1996 Sep 20;262(2):129-39. doi: 10.1006/jmbi.1996.0503. J Mol Biol. 1996. PMID: 8831784 Review.

4

Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences.

Ioshikhes I, Bolshoy A, Trifonov EN. Ioshikhes I, et al. Among authors: bolshoy a. J Biomol Struct Dyn. 1992 Jun;9(6):1111-7. doi: 10.1080/07391102.1992.10507982. J Biomol Struct Dyn. 1992. PMID: 1637505

5

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Bolshoy A, McNamara P, Harrington RE, Trifonov EN. Bolshoy A, et al. Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2312-6. doi: 10.1073/pnas.88.6.2312. Proc Natl Acad Sci U S A. 1991. PMID: 2006170 Free PMC article.

6

Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure.

Peleg O, Trifonov EN, Bolshoy A. Peleg O, et al. Among authors: bolshoy a. Nucleic Acids Res. 2003 Jul 15;31(14):4192-200. doi: 10.1093/nar/gkg454. Nucleic Acids Res. 2003. PMID: 12853637 Free PMC article.

7

Sequence-dependent kinks induced in curved DNA.

McNamara PT, Bolshoy A, Trifonov EN, Harrington RE. McNamara PT, et al. Among authors: bolshoy a. J Biomol Struct Dyn. 1990 Dec;8(3):529-38. doi: 10.1080/07391102.1990.10507827. J Biomol Struct Dyn. 1990. PMID: 2100517

8

Enhancement of the nucleosomal pattern in sequences of lower complexity.

Bolshoy A, Shapiro K, Trifonov EN, Ioshikhes I. Bolshoy A, et al. Nucleic Acids Res. 1997 Aug 15;25(16):3248-54. doi: 10.1093/nar/25.16.3248. Nucleic Acids Res. 1997. PMID: 9241237 Free PMC article.

9

RNA secondary structure and squence conservation in C1 region of human immunodeficiency virus type 1 env gene.

Peleg O, Brunak S, Trifonov EN, Nevo E, Bolshoy A. Peleg O, et al. Among authors: bolshoy a. AIDS Res Hum Retroviruses. 2002 Aug 10;18(12):867-78. doi: 10.1089/08892220260190353. AIDS Res Hum Retroviruses. 2002. PMID: 12201910

10

CURVATURE: software for the analysis of curved DNA.

Shpigelman ES, Trifonov EN, Bolshoy A. Shpigelman ES, et al. Among authors: bolshoy a. Comput Appl Biosci. 1993 Aug;9(4):435-40. doi: 10.1093/bioinformatics/9.4.435. Comput Appl Biosci. 1993. PMID: 8402210

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