Trifonov EN - Search Results

1

Dinucleosome DNA of human K562 cells: experimental and computational characterizations.

Kato M, Onishi Y, Wada-Kiyama Y, Abe T, Ikemura T, Kogan S, Bolshoy A, Trifonov EN, Kiyama R. Kato M, et al. Among authors: trifonov en. J Mol Biol. 2003 Sep 5;332(1):111-25. doi: 10.1016/s0022-2836(03)00838-6. J Mol Biol. 2003. PMID: 12946351

2

What positions nucleosomes?--A model.

Kiyama R, Trifonov EN. Kiyama R, et al. Among authors: trifonov en. FEBS Lett. 2002 Jul 17;523(1-3):7-11. doi: 10.1016/s0014-5793(02)02937-x. FEBS Lett. 2002. PMID: 12123795 Free article. Review.

3

Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor alpha gene.

Wada-Kiyama Y, Kuwabara K, Sakuma Y, Onishi Y, Trifonov EN, Kiyama R. Wada-Kiyama Y, et al. Among authors: trifonov en. FEBS Lett. 1999 Feb 5;444(1):117-24. doi: 10.1016/s0014-5793(99)00041-1. FEBS Lett. 1999. PMID: 10037159 Free article.

4

Sequence structure of human nucleosome DNA.

Kogan SB, Kato M, Kiyama R, Trifonov EN. Kogan SB, et al. Among authors: trifonov en. J Biomol Struct Dyn. 2006 Aug;24(1):43-8. doi: 10.1080/07391102.2006.10507097. J Biomol Struct Dyn. 2006. PMID: 16780374

5

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences.

Ioshikhes I, Bolshoy A, Derenshteyn K, Borodovsky M, Trifonov EN. Ioshikhes I, et al. Among authors: trifonov en. J Mol Biol. 1996 Sep 20;262(2):129-39. doi: 10.1006/jmbi.1996.0503. J Mol Biol. 1996. PMID: 8831784 Review.

6

Gene splice sites correlate with nucleosome positions.

Kogan S, Trifonov EN. Kogan S, et al. Among authors: trifonov en. Gene. 2005 Jun 6;352:57-62. doi: 10.1016/j.gene.2005.03.004. Epub 2005 Apr 26. Gene. 2005. PMID: 15862762

7

Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences.

Ioshikhes I, Bolshoy A, Trifonov EN. Ioshikhes I, et al. Among authors: trifonov en. J Biomol Struct Dyn. 1992 Jun;9(6):1111-7. doi: 10.1080/07391102.1992.10507982. J Biomol Struct Dyn. 1992. PMID: 1637505

8

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Bolshoy A, McNamara P, Harrington RE, Trifonov EN. Bolshoy A, et al. Among authors: trifonov en. Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2312-6. doi: 10.1073/pnas.88.6.2312. Proc Natl Acad Sci U S A. 1991. PMID: 2006170 Free PMC article.

9

Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element.

Salih F, Salih B, Kogan S, Trifonov EN. Salih F, et al. Among authors: trifonov en. J Biomol Struct Dyn. 2008 Aug;26(1):9-16. doi: 10.1080/07391102.2008.10507219. J Biomol Struct Dyn. 2008. PMID: 18533722

10

Sequence-dependent kinks induced in curved DNA.

McNamara PT, Bolshoy A, Trifonov EN, Harrington RE. McNamara PT, et al. Among authors: trifonov en. J Biomol Struct Dyn. 1990 Dec;8(3):529-38. doi: 10.1080/07391102.1990.10507827. J Biomol Struct Dyn. 1990. PMID: 2100517

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