Reed JL - Search Results

1

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).

Reed JL, Vo TD, Schilling CH, Palsson BO. Reed JL, et al. Genome Biol. 2003;4(9):R54. doi: 10.1186/gb-2003-4-9-r54. Epub 2003 Aug 28. Genome Biol. 2003. PMID: 12952533 Free PMC article.

2

Thirteen years of building constraint-based in silico models of Escherichia coli.

Reed JL, Palsson BØ. Reed JL, et al. J Bacteriol. 2003 May;185(9):2692-9. doi: 10.1128/JB.185.9.2692-2699.2003. J Bacteriol. 2003. PMID: 12700248 Free PMC article. Review. No abstract available.

3

Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.

Reed JL, Palsson BØ. Reed JL, et al. Genome Res. 2004 Sep;14(9):1797-805. doi: 10.1101/gr.2546004. Genome Res. 2004. PMID: 15342562 Free PMC article.

4

Genome-scale models of microbial cells: evaluating the consequences of constraints.

Price ND, Reed JL, Palsson BØ. Price ND, et al. Among authors: reed jl. Nat Rev Microbiol. 2004 Nov;2(11):886-97. doi: 10.1038/nrmicro1023. Nat Rev Microbiol. 2004. PMID: 15494745 Review.

5

The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.

Barrett CL, Herring CD, Reed JL, Palsson BO. Barrett CL, et al. Among authors: reed jl. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19103-8. doi: 10.1073/pnas.0505231102. Epub 2005 Dec 15. Proc Natl Acad Sci U S A. 2005. PMID: 16357206 Free PMC article.

6

Experimental and computational assessment of conditionally essential genes in Escherichia coli.

Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BØ, Agarwalla S. Joyce AR, et al. Among authors: reed jl. J Bacteriol. 2006 Dec;188(23):8259-71. doi: 10.1128/JB.00740-06. Epub 2006 Sep 29. J Bacteriol. 2006. PMID: 17012394 Free PMC article.

7

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. Feist AM, et al. Among authors: reed jl. Mol Syst Biol. 2007;3:121. doi: 10.1038/msb4100155. Epub 2007 Jun 26. Mol Syst Biol. 2007. PMID: 17593909 Free PMC article.

8

Reconstruction of biochemical networks in microorganisms.

Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson BØ. Feist AM, et al. Among authors: reed jl. Nat Rev Microbiol. 2009 Feb;7(2):129-43. doi: 10.1038/nrmicro1949. Epub 2008 Dec 31. Nat Rev Microbiol. 2009. PMID: 19116616 Free PMC article. Review.

9

Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices.

Price ND, Reed JL, Papin JA, Famili I, Palsson BO. Price ND, et al. Among authors: reed jl. Biophys J. 2003 Feb;84(2 Pt 1):794-804. doi: 10.1016/S0006-3495(03)74899-1. Biophys J. 2003. PMID: 12547764 Free PMC article.

10

Network-based analysis of metabolic regulation in the human red blood cell.

Price ND, Reed JL, Papin JA, Wiback SJ, Palsson BO. Price ND, et al. Among authors: reed jl. J Theor Biol. 2003 Nov 21;225(2):185-94. doi: 10.1016/s0022-5193(03)00237-6. J Theor Biol. 2003. PMID: 14575652

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