Levy RM - Search Results

1

AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling.

Gallicchio E, Levy RM. Gallicchio E, et al. Among authors: levy rm. J Comput Chem. 2004 Mar;25(4):479-99. doi: 10.1002/jcc.10400. J Comput Chem. 2004. PMID: 14735568

2

Molecular dynamics simulation of solvated protein at high pressure.

Kitchen DB, Reed LH, Levy RM. Kitchen DB, et al. Among authors: levy rm. Biochemistry. 1992 Oct 20;31(41):10083-93. doi: 10.1021/bi00156a031. Biochemistry. 1992. PMID: 1382594

3

Molecular mechanics and electrostatic effects.

Figueirido F, Del Buono GS, Levy RM. Figueirido F, et al. Among authors: levy rm. Biophys Chem. 1994 Aug;51(2-3):235-41. doi: 10.1016/0301-4622(94)00044-1. Biophys Chem. 1994. PMID: 7919034

4

Crankshaft motions of the polypeptide backbone in molecular dynamics simulations of human type-alpha transforming growth factor.

Fadel AR, Jin DQ, Montelione GT, Levy RM. Fadel AR, et al. Among authors: levy rm. J Biomol NMR. 1995 Sep;6(2):221-6. doi: 10.1007/BF00211787. J Biomol NMR. 1995. PMID: 8589611

5

Protein hydration and unfolding--insights from experimental partial specific volumes and unfolded protein models.

Murphy LR, Matubayasi N, Payne VA, Levy RM. Murphy LR, et al. Among authors: levy rm. Fold Des. 1998;3(2):105-18. doi: 10.1016/S1359-0278(98)00016-9. Fold Des. 1998. PMID: 9565755

6

Tertiary contacts in alpha-lactalbumin at pH 7 and pH 2: a molecular dynamics study.

Murphy LR, Li N, Baum J, Levy RM. Murphy LR, et al. Among authors: levy rm. J Biomol Struct Dyn. 1998 Oct;16(2):355-65. doi: 10.1080/07391102.1998.10508253. J Biomol Struct Dyn. 1998. PMID: 9833674

7

Computer simulations with explicit solvent: recent progress in the thermodynamic decomposition of free energies and in modeling electrostatic effects.

Levy RM, Gallicchio E. Levy RM, et al. Annu Rev Phys Chem. 1998;49:531-67. doi: 10.1146/annurev.physchem.49.1.531. Annu Rev Phys Chem. 1998. PMID: 9933909 Review.

8

The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators.

Gallicchio E, Zhang LY, Levy RM. Gallicchio E, et al. Among authors: levy rm. J Comput Chem. 2002 Apr 15;23(5):517-29. doi: 10.1002/jcc.10045. J Comput Chem. 2002. PMID: 11948578

9

Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model.

Felts AK, Gallicchio E, Wallqvist A, Levy RM. Felts AK, et al. Among authors: levy rm. Proteins. 2002 Aug 1;48(2):404-22. doi: 10.1002/prot.10171. Proteins. 2002. PMID: 12112706

10

On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute-solvent interaction energy.

Levy RM, Zhang LY, Gallicchio E, Felts AK. Levy RM, et al. J Am Chem Soc. 2003 Aug 6;125(31):9523-30. doi: 10.1021/ja029833a. J Am Chem Soc. 2003. PMID: 12889983

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