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Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions.
Silva JC, Cornillot E, McCracken C, Usmani-Brown S, Dwivedi A, Ifeonu OO, Crabtree J, Gotia HT, Virji AZ, Reynes C, Colinge J, Kumar V, Lawres L, Pazzi JE, Pablo JV, Hung C, Brancato J, Kumari P, Orvis J, Tretina K, Chibucos M, Ott S, Sadzewicz L, Sengamalay N, Shetty AC, Su Q, Tallon L, Fraser CM, Frutos R, Molina DM, Krause PJ, Ben Mamoun C. Silva JC, et al. Among authors: orvis j. Sci Rep. 2016 Oct 18;6:35284. doi: 10.1038/srep35284. Sci Rep. 2016. PMID: 27752055 Free PMC article.
Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.
Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, Dyer DW, Inzana TJ. Siddaramappa S, et al. Among authors: orvis j. BMC Genomics. 2011 Nov 23;12:570. doi: 10.1186/1471-2164-12-570. BMC Genomics. 2011. PMID: 22111657 Free PMC article.
Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.
Ifeonu OO, Chibucos MC, Orvis J, Su Q, Elwin K, Guo F, Zhang H, Xiao L, Sun M, Chalmers RM, Fraser CM, Zhu G, Kissinger JC, Widmer G, Silva JC. Ifeonu OO, et al. Among authors: orvis j. Pathog Dis. 2016 Oct;74(7):ftw080. doi: 10.1093/femspd/ftw080. Epub 2016 Aug 12. Pathog Dis. 2016. PMID: 27519257 Free PMC article.
Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms.
Tretina K, Pelle R, Orvis J, Gotia HT, Ifeonu OO, Kumari P, Palmateer NC, Iqbal SBA, Fry LM, Nene VM, Daubenberger CA, Bishop RP, Silva JC. Tretina K, et al. Among authors: orvis j. BMC Genomics. 2020 Apr 3;21(1):279. doi: 10.1186/s12864-020-6683-0. BMC Genomics. 2020. PMID: 32245418 Free PMC article.
Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity.
Palmateer NC, Tretina K, Orvis J, Ifeonu OO, Crabtree J, Drabék E, Pelle R, Awino E, Gotia HT, Munro JB, Tallon L, Morrison WI, Daubenberger CA, Nene V, Knowles DP, Bishop RP, Silva JC. Palmateer NC, et al. Among authors: orvis j. PLoS Negl Trop Dis. 2020 Oct 29;14(10):e0008781. doi: 10.1371/journal.pntd.0008781. eCollection 2020 Oct. PLoS Negl Trop Dis. 2020. PMID: 33119590 Free PMC article.
49 results