Lin SM - Search Results

1

MedlineR: an open source library in R for Medline literature data mining.

Lin SM, McConnell P, Johnson KF, Shoemaker J. Lin SM, et al. Bioinformatics. 2004 Dec 12;20(18):3659-61. doi: 10.1093/bioinformatics/bth404. Epub 2004 Jul 29. Bioinformatics. 2004. PMID: 15284107

2

Microarray analysis: a comparative approach.

Johnson KF, Lin SM. Johnson KF, et al. Among authors: lin sm. Mol Cancer Ther. 2002 Jan;1(3):237-8. Mol Cancer Ther. 2002. PMID: 12467218 No abstract available.

3

lumi: a pipeline for processing Illumina microarray.

Du P, Kibbe WA, Lin SM. Du P, et al. Among authors: lin sm. Bioinformatics. 2008 Jul 1;24(13):1547-8. doi: 10.1093/bioinformatics/btn224. Epub 2008 May 8. Bioinformatics. 2008. PMID: 18467348

4

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.

Du P, Kibbe WA, Lin SM. Du P, et al. Among authors: lin sm. Bioinformatics. 2006 Sep 1;22(17):2059-65. doi: 10.1093/bioinformatics/btl355. Epub 2006 Jul 4. Bioinformatics. 2006. PMID: 16820428

5

Mining biomedical data using MetaMap Transfer (MMtx) and the Unified Medical Language System (UMLS).

Osborne JD, Lin S, Zhu L, Kibbe WA. Osborne JD, et al. Methods Mol Biol. 2007;408:153-69. doi: 10.1007/978-1-59745-547-3_9. Methods Mol Biol. 2007. PMID: 18314582

6

Model-based variance-stabilizing transformation for Illumina microarray data.

Lin SM, Du P, Huber W, Kibbe WA. Lin SM, et al. Nucleic Acids Res. 2008 Feb;36(2):e11. doi: 10.1093/nar/gkm1075. Epub 2008 Jan 4. Nucleic Acids Res. 2008. PMID: 18178591 Free PMC article.

7

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

Zhu LJ, Gazin C, Lawson ND, Pagès H, Lin SM, Lapointe DS, Green MR. Zhu LJ, et al. Among authors: lin sm. BMC Bioinformatics. 2010 May 11;11:237. doi: 10.1186/1471-2105-11-237. BMC Bioinformatics. 2010. PMID: 20459804 Free PMC article.

8

Graph embedding on biomedical networks: methods, applications and evaluations.

Yue X, Wang Z, Huang J, Parthasarathy S, Moosavinasab S, Huang Y, Lin SM, Zhang W, Zhang P, Sun H. Yue X, et al. Among authors: lin sm. Bioinformatics. 2020 Feb 15;36(4):1241-1251. doi: 10.1093/bioinformatics/btz718. Bioinformatics. 2020. PMID: 31584634 Free PMC article.

9

Interpreting microarray results with gene ontology and MeSH.

Osborne JD, Zhu LJ, Lin SM, Kibbe WA. Osborne JD, et al. Among authors: lin sm. Methods Mol Biol. 2007;377:223-42. doi: 10.1007/978-1-59745-390-5_14. Methods Mol Biol. 2007. PMID: 17634620 Review.

10

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.

Du P, Feng G, Flatow J, Song J, Holko M, Kibbe WA, Lin SM. Du P, et al. Among authors: lin sm. Bioinformatics. 2009 Jun 15;25(12):i63-8. doi: 10.1093/bioinformatics/btp193. Bioinformatics. 2009. PMID: 19478018 Free PMC article.

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