Bu D - Search Results

1

The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast.

Lu H, Zhu X, Liu H, Skogerbø G, Zhang J, Zhang Y, Cai L, Zhao Y, Sun S, Xu J, Bu D, Chen R. Lu H, et al. Among authors: bu d. Nucleic Acids Res. 2004 Sep 8;32(16):4804-11. doi: 10.1093/nar/gkh814. Print 2004. Nucleic Acids Res. 2004. PMID: 15356297 Free PMC article.

2

Topological structure analysis of the protein-protein interaction network in budding yeast.

Bu D, Zhao Y, Cai L, Xue H, Zhu X, Lu H, Zhang J, Sun S, Ling L, Zhang N, Li G, Chen R. Bu D, et al. Nucleic Acids Res. 2003 May 1;31(9):2443-50. doi: 10.1093/nar/gkg340. Nucleic Acids Res. 2003. PMID: 12711690 Free PMC article.

3

Date of origin of the SARS coronavirus strains.

Lu H, Zhao Y, Zhang J, Wang Y, Li W, Zhu X, Sun S, Xu J, Ling L, Cai L, Bu D, Chen R. Lu H, et al. Among authors: bu d. BMC Infect Dis. 2004 Feb 6;4:3. doi: 10.1186/1471-2334-4-3. BMC Infect Dis. 2004. PMID: 15028113 Free PMC article.

4

NONCODE: an integrated knowledge database of non-coding RNAs.

Liu C, Bai B, Skogerbø G, Cai L, Deng W, Zhang Y, Bu D, Zhao Y, Chen R. Liu C, et al. Among authors: bu d. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D112-5. doi: 10.1093/nar/gki041. Nucleic Acids Res. 2005. PMID: 15608158 Free PMC article.

5

The Genomes of Oryza sativa: a history of duplications.

Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Wang J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Wang J, Wang X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Liu J, Xiao Y, Bu D, Tan J, Yang L, Ye C, Zhang J, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Zhang Z, Zhang Y, Huang X, Su Z, Tong W, Li J, Tong Z, Li S, Ye J, Wang L, Fang L, Lei T, Chen C, Chen H, Xu Z, Li H, Huang H, Zhang F, Xu H, Li N, Zhao C, Li S, Dong L, Huang Y, Li L, Xi Y, Qi Q, Li W, Zhang B, Hu W, Zhang Y, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wang J, Wong GK, Yang H. Yu J, et al. Among authors: bu d. PLoS Biol. 2005 Feb;3(2):e38. doi: 10.1371/journal.pbio.0030038. Epub 2005 Feb 1. PLoS Biol. 2005. PMID: 15685292 Free PMC article.

6

Genome-wide analysis of mammalian DNA segment fusion/fission.

Zhang Z, Sun H, Zhang Y, Zhao Y, Shi B, Sun S, Lu H, Bu D, Ling L, Chen R. Zhang Z, et al. Among authors: bu d. J Theor Biol. 2006 May 21;240(2):200-8. doi: 10.1016/j.jtbi.2005.09.016. Epub 2005 Nov 14. J Theor Biol. 2006. PMID: 16289610

7

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R. Deng W, et al. Among authors: bu d. Genome Res. 2006 Jan;16(1):20-9. doi: 10.1101/gr.4139206. Epub 2005 Dec 12. Genome Res. 2006. PMID: 16344563 Free PMC article.

8

Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm.

Sun S, Zhao Y, Jiao Y, Yin Y, Cai L, Zhang Y, Lu H, Chen R, Bu D. Sun S, et al. Among authors: bu d. FEBS Lett. 2006 Mar 20;580(7):1891-6. doi: 10.1016/j.febslet.2006.02.053. Epub 2006 Feb 28. FEBS Lett. 2006. PMID: 16516894 Free article.

9

A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.

Zhang Z, Sun S, Zhu X, Chang S, Liu X, Yu C, Bu D, Chen R. Zhang Z, et al. Among authors: bu d. BMC Bioinformatics. 2006 Apr 26;7:222. doi: 10.1186/1471-2105-7-222. BMC Bioinformatics. 2006. PMID: 16638152 Free PMC article.

10

An iterative algorithm to quantify the factors influencing peptide fragmentation for MS/MS spectrum.

Yu C, Lin Y, Sun S, Cai J, Zhang J, Zhang Z, Chen R, Bu D. Yu C, et al. Among authors: bu d. Comput Syst Bioinformatics Conf. 2006:353-60. Comput Syst Bioinformatics Conf. 2006. PMID: 17369654 Free article.

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