Sidow A - Search Results

1

Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance.

Johnson DS, Davidson B, Brown CD, Smith WC, Sidow A. Johnson DS, et al. Among authors: sidow a. Genome Res. 2004 Dec;14(12):2448-56. doi: 10.1101/gr.2964504. Epub 2004 Nov 15. Genome Res. 2004. PMID: 15545496 Free PMC article.

2

De novo discovery of a tissue-specific gene regulatory module in a chordate.

Johnson DS, Zhou Q, Yagi K, Satoh N, Wong W, Sidow A. Johnson DS, et al. Among authors: sidow a. Genome Res. 2005 Oct;15(10):1315-24. doi: 10.1101/gr.4062605. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169925 Free PMC article.

3

Functional architecture and evolution of transcriptional elements that drive gene coexpression.

Brown CD, Johnson DS, Sidow A. Brown CD, et al. Among authors: sidow a. Science. 2007 Sep 14;317(5844):1557-60. doi: 10.1126/science.1145893. Science. 2007. PMID: 17872446

4

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A. Hill MM, et al. Among authors: sidow a. Genome Res. 2008 Aug;18(8):1369-79. doi: 10.1101/gr.078576.108. Epub 2008 Jun 2. Genome Res. 2008. PMID: 18519652 Free PMC article.

5

Distribution and intensity of constraint in mammalian genomic sequence.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2005 Jul;15(7):901-13. doi: 10.1101/gr.3577405. Epub 2005 Jun 17. Genome Res. 2005. PMID: 15965027 Free PMC article.

6

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Valouev A, et al. Among authors: sidow a. Nat Methods. 2008 Sep;5(9):829-34. doi: 10.1038/nmeth.1246. Nat Methods. 2008. PMID: 19160518 Free PMC article.

7

Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.

Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A. Goode DL, et al. Among authors: sidow a. Genome Res. 2010 Mar;20(3):301-10. doi: 10.1101/gr.102210.109. Epub 2010 Jan 12. Genome Res. 2010. PMID: 20067941 Free PMC article.

8

Characterization of evolutionary rates and constraints in three Mammalian genomes.

Cooper GM, Brudno M, Stone EA, Dubchak I, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2004 Apr;14(4):539-48. doi: 10.1101/gr.2034704. Genome Res. 2004. PMID: 15059994 Free PMC article.

9

ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses.

Binkley J, Karra K, Kirby A, Hosobuchi M, Stone EA, Sidow A. Binkley J, et al. Among authors: sidow a. Genome Res. 2010 Jan;20(1):142-54. doi: 10.1101/gr.097121.109. Epub 2009 Oct 21. Genome Res. 2010. PMID: 19846609 Free PMC article.

10

Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes.

Cooper GM, Brudno M; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2003 May;13(5):813-20. doi: 10.1101/gr.1064503. Genome Res. 2003. PMID: 12727901 Free PMC article.

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