Kanaya S - Search Results

1

Accurate extraction of functional associations between proteins based on common interaction partners and common domains.

Okada K, Kanaya S, Asai K. Okada K, et al. Among authors: kanaya s. Bioinformatics. 2005 May 1;21(9):2043-8. doi: 10.1093/bioinformatics/bti305. Epub 2005 Feb 4. Bioinformatics. 2005. PMID: 15699027

2

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S. Altaf-Ul-Amin M, et al. Among authors: kanaya s. BMC Bioinformatics. 2006 Apr 14;7:207. doi: 10.1186/1471-2105-7-207. BMC Bioinformatics. 2006. PMID: 16613608 Free PMC article.

3

An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values.

Sakurai N, Ara T, Kanaya S, Nakamura Y, Iijima Y, Enomoto M, Motegi T, Aoki K, Suzuki H, Shibata D. Sakurai N, et al. Among authors: kanaya s. Bioinformatics. 2013 Jan 15;29(2):290-1. doi: 10.1093/bioinformatics/bts660. Epub 2012 Nov 18. Bioinformatics. 2013. PMID: 23162084

4

An unsupervised approach to predict functional relations between genes based on expression data.

Altaf-Ul-Amin M, Katsuragi T, Sato T, Ono N, Kanaya S. Altaf-Ul-Amin M, et al. Among authors: kanaya s. Biomed Res Int. 2014;2014:154594. doi: 10.1155/2014/154594. Epub 2014 Mar 31. Biomed Res Int. 2014. PMID: 24800208 Free PMC article.

5

UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics.

Sakurai N, Narise T, Sim JS, Lee CM, Ikeda C, Akimoto N, Kanaya S, Stegle O. Sakurai N, et al. Among authors: kanaya s. Bioinformatics. 2018 Feb 15;34(4):698-700. doi: 10.1093/bioinformatics/btx649. Bioinformatics. 2018. PMID: 29040459 Free PMC article.

6

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.

Oshima T, Aiba H, Masuda Y, Kanaya S, Sugiura M, Wanner BL, Mori H, Mizuno T. Oshima T, et al. Among authors: kanaya s. Mol Microbiol. 2002 Oct;46(1):281-91. doi: 10.1046/j.1365-2958.2002.03170.x. Mol Microbiol. 2002. PMID: 12366850 Free article.

7

AMDORAP: non-targeted metabolic profiling based on high-resolution LC-MS.

Takahashi H, Morimoto T, Ogasawara N, Kanaya S. Takahashi H, et al. Among authors: kanaya s. BMC Bioinformatics. 2011 Jun 24;12:259. doi: 10.1186/1471-2105-12-259. BMC Bioinformatics. 2011. PMID: 21702951 Free PMC article.

8

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, Imanishi T. Kikugawa S, et al. Among authors: kanaya s. BMC Syst Biol. 2012;6 Suppl 2(Suppl 2):S7. doi: 10.1186/1752-0509-6-S2-S7. Epub 2012 Dec 12. BMC Syst Biol. 2012. PMID: 23282181 Free PMC article.

9

An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease.

Eguchi R, Karim MB, Hu P, Sato T, Ono N, Kanaya S, Altaf-Ul-Amin M. Eguchi R, et al. Among authors: kanaya s. BMC Bioinformatics. 2018 Jul 13;19(1):264. doi: 10.1186/s12859-018-2251-x. BMC Bioinformatics. 2018. PMID: 30005591 Free PMC article.

10

Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks.

Eguchi R, Ono N, Hirai Morita A, Katsuragi T, Nakamura S, Huang M, Altaf-Ul-Amin M, Kanaya S. Eguchi R, et al. Among authors: kanaya s. BMC Bioinformatics. 2019 Jul 9;20(1):380. doi: 10.1186/s12859-019-2963-6. BMC Bioinformatics. 2019. PMID: 31288752 Free PMC article.

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