Day R - Search Results

1

Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation.

Ferguson N, Day R, Johnson CM, Allen MD, Daggett V, Fersht AR. Ferguson N, et al. Among authors: day r. J Mol Biol. 2005 Apr 8;347(4):855-70. doi: 10.1016/j.jmb.2004.12.061. J Mol Biol. 2005. PMID: 15769475

2

Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation.

Jemth P, Gianni S, Day R, Li B, Johnson CM, Daggett V, Fersht AR. Jemth P, et al. Among authors: day r. Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6450-5. doi: 10.1073/pnas.0401732101. Epub 2004 Apr 19. Proc Natl Acad Sci U S A. 2004. PMID: 15096617 Free PMC article.

3

The structure of the major transition state for folding of an FF domain from experiment and simulation.

Jemth P, Day R, Gianni S, Khan F, Allen M, Daggett V, Fersht AR. Jemth P, et al. Among authors: day r. J Mol Biol. 2005 Jul 8;350(2):363-78. doi: 10.1016/j.jmb.2005.04.067. J Mol Biol. 2005. PMID: 15935381

4

Direct observation of microscopic reversibility in single-molecule protein folding.

Day R, Daggett V. Day R, et al. J Mol Biol. 2007 Feb 16;366(2):677-86. doi: 10.1016/j.jmb.2006.11.043. Epub 2006 Nov 15. J Mol Biol. 2007. PMID: 17174331 Free PMC article.

5

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding.

Day R, Bennion BJ, Ham S, Daggett V. Day R, et al. J Mol Biol. 2002 Sep 6;322(1):189-203. doi: 10.1016/s0022-2836(02)00672-1. J Mol Biol. 2002. PMID: 12215424

6

All-atom simulations of protein folding and unfolding.

Day R, Daggett V. Day R, et al. Adv Protein Chem. 2003;66:373-403. doi: 10.1016/s0065-3233(03)66009-2. Adv Protein Chem. 2003. PMID: 14631823 Review. No abstract available.

7

Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent.

Day R, Daggett V. Day R, et al. Protein Sci. 2005 May;14(5):1242-52. doi: 10.1110/ps.041226005. Protein Sci. 2005. PMID: 15840831 Free PMC article.

8

Ensemble versus single-molecule protein unfolding.

Day R, Daggett V. Day R, et al. Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13445-50. doi: 10.1073/pnas.0501773102. Epub 2005 Sep 9. Proc Natl Acad Sci U S A. 2005. PMID: 16155127 Free PMC article.

9

Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations.

Beck DA, Jonsson AL, Schaeffer RD, Scott KA, Day R, Toofanny RD, Alonso DO, Daggett V. Beck DA, et al. Among authors: day r. Protein Eng Des Sel. 2008 Jun;21(6):353-68. doi: 10.1093/protein/gzn011. Epub 2008 Apr 14. Protein Eng Des Sel. 2008. PMID: 18411224

10

A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary.

Day R, Beck DA, Armen RS, Daggett V. Day R, et al. Protein Sci. 2003 Oct;12(10):2150-60. doi: 10.1110/ps.0306803. Protein Sci. 2003. PMID: 14500873 Free PMC article.

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