Caselle M - Search Results

1

Ab initio identification of putative human transcription factor binding sites by comparative genomics.

Corà D, Herrmann C, Dieterich C, Di Cunto F, Provero P, Caselle M. Corà D, et al. Among authors: caselle m. BMC Bioinformatics. 2005 May 2;6:110. doi: 10.1186/1471-2105-6-110. BMC Bioinformatics. 2005. PMID: 15865625 Free PMC article.

2

Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes.

Caselle M, Di Cunto F, Provero P. Caselle M, et al. BMC Bioinformatics. 2002;3:7. doi: 10.1186/1471-2105-3-7. Epub 2002 Feb 14. BMC Bioinformatics. 2002. PMID: 11876822 Free PMC article.

3

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs.

Corà D, Di Cunto F, Provero P, Silengo L, Caselle M. Corà D, et al. Among authors: caselle m. BMC Bioinformatics. 2004 May 11;5:57. doi: 10.1186/1471-2105-5-57. BMC Bioinformatics. 2004. PMID: 15137914 Free PMC article.

4

Re A, Cora D, Puliti AM, Caselle M, Sbrana I. Re A, et al. Among authors: caselle m. BMC Bioinformatics. 2006 Sep 18;7:413. doi: 10.1186/1471-2105-7-413. BMC Bioinformatics. 2006. PMID: 16981993 Free PMC article.

5

Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions.

Corà D, Di Cunto F, Caselle M, Provero P. Corà D, et al. Among authors: caselle m. BMC Bioinformatics. 2007 May 24;8:174. doi: 10.1186/1471-2105-8-174. BMC Bioinformatics. 2007. PMID: 17524134 Free PMC article.

6

Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.

Moroni E, Caselle M, Fogolari F. Moroni E, et al. Among authors: caselle m. BMC Struct Biol. 2007 Sep 27;7:61. doi: 10.1186/1472-6807-7-61. BMC Struct Biol. 2007. PMID: 17900341 Free PMC article.

7

Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human.

Re A, Corá D, Taverna D, Caselle M. Re A, et al. Among authors: caselle m. Mol Biosyst. 2009 Aug;5(8):854-67. doi: 10.1039/b900177h. Epub 2009 Jun 19. Mol Biosyst. 2009. PMID: 19603121 Free PMC article.

8

Molecular models for intrastrand DNA G-quadruplexes.

Fogolari F, Haridas H, Corazza A, Viglino P, Corà D, Caselle M, Esposito G, Xodo LE. Fogolari F, et al. Among authors: caselle m. BMC Struct Biol. 2009 Oct 7;9:64. doi: 10.1186/1472-6807-9-64. BMC Struct Biol. 2009. PMID: 19811654 Free PMC article.

9

Nucleation dynamics in two-dimensional cylindrical Ising models and chemotaxis.

Bosia C, Caselle M, Corá D. Bosia C, et al. Among authors: caselle m. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Feb;81(2 Pt 1):021907. doi: 10.1103/PhysRevE.81.021907. Epub 2010 Feb 8. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20365595

10

A new approach for the identification of processed pseudogenes.

Molineris I, Sales G, Bianchi F, Di Cunto F, Caselle M. Molineris I, et al. Among authors: caselle m. J Comput Biol. 2010 May;17(5):755-65. doi: 10.1089/cmb.2009.0027. J Comput Biol. 2010. PMID: 20500026

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