Golden A - Search Results

1

Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.

Mahony S, Golden A, Smith TJ, Benos PV. Mahony S, et al. Among authors: golden a. Bioinformatics. 2005 Jun;21 Suppl 1:i283-91. doi: 10.1093/bioinformatics/bti1025. Bioinformatics. 2005. PMID: 15961468

2

Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.

Mahony S, McInerney JO, Smith TJ, Golden A. Mahony S, et al. Among authors: golden a. BMC Bioinformatics. 2004 Mar 5;5:23. doi: 10.1186/1471-2105-5-23. BMC Bioinformatics. 2004. PMID: 15070404 Free PMC article.

3

Transcription factor binding site identification using the self-organizing map.

Mahony S, Hendrix D, Golden A, Smith TJ, Rokhsar DS. Mahony S, et al. Among authors: golden a. Bioinformatics. 2005 May 1;21(9):1807-14. doi: 10.1093/bioinformatics/bti256. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647296

4

Self-organizing neural networks to support the discovery of DNA-binding motifs.

Mahony S, Benos PV, Smith TJ, Golden A. Mahony S, et al. Among authors: golden a. Neural Netw. 2006 Jul-Aug;19(6-7):950-62. doi: 10.1016/j.neunet.2006.05.023. Epub 2006 Jul 12. Neural Netw. 2006. PMID: 16839740

5

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.

Geeleher P, Morris D, Hinde JP, Golden A. Geeleher P, et al. Among authors: golden a. Bioinformatics. 2009 Jun 1;25(11):1438-9. doi: 10.1093/bioinformatics/btp165. Epub 2009 Mar 23. Bioinformatics. 2009. PMID: 19307241

6

Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.

Broin PÓ, Smith TJ, Golden AA. Broin PÓ, et al. BMC Bioinformatics. 2015 Jan 28;16:22. doi: 10.1186/s12859-015-0450-2. BMC Bioinformatics. 2015. PMID: 25627106 Free PMC article.

7

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.

Shieh KR, Kratschmer C, Maier KE, Greally JM, Levy M, Golden A. Shieh KR, et al. Among authors: golden a. Bioinformatics. 2020 May 1;36(9):2905-2906. doi: 10.1093/bioinformatics/btaa054. Bioinformatics. 2020. PMID: 31999328 Free PMC article.

8

Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene.

Thomas BJ, Rubio ED, Krumm N, Broin PO, Bomsztyk K, Welcsh P, Greally JM, Golden AA, Krumm A. Thomas BJ, et al. Among authors: golden aa. Epigenetics Chromatin. 2011 Aug 3;4:14. doi: 10.1186/1756-8935-4-14. Epigenetics Chromatin. 2011. PMID: 21812971 Free PMC article.

9

The Wasp System: an open source environment for managing and analyzing genomic data.

McLellan AS, Dubin RA, Jing Q, Broin PÓ, Moskowitz D, Suzuki M, Calder RB, Hargitai J, Golden A, Greally JM. McLellan AS, et al. Among authors: golden a. Genomics. 2012 Dec;100(6):345-51. doi: 10.1016/j.ygeno.2012.08.005. Epub 2012 Aug 27. Genomics. 2012. PMID: 22944616 Free article.

10

Increased intragraft rejection-associated gene transcripts in patients with donor-specific antibodies and normal biopsies.

Hayde N, Broin PÓ, Bao Y, de Boccardo G, Lubetzky M, Ajaimy M, Pullman J, Colovai A, Golden A, Akalin E. Hayde N, et al. Among authors: golden a. Kidney Int. 2014 Sep;86(3):600-9. doi: 10.1038/ki.2014.75. Epub 2014 Mar 26. Kidney Int. 2014. PMID: 24670411 Free article.

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