Meyer CA - Search Results

1

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Fox EA, Silver PA, Brown M. Carroll JS, et al. Among authors: meyer ca. Cell. 2005 Jul 15;122(1):33-43. doi: 10.1016/j.cell.2005.05.008. Cell. 2005. PMID: 16009131 Free article.

2

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Li W, Meyer CA, Liu XS. Li W, et al. Among authors: meyer ca. Bioinformatics. 2005 Jun;21 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bti1046. Bioinformatics. 2005. PMID: 15961467

3

Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells.

Brodsky AS, Meyer CA, Swinburne IA, Hall G, Keenan BJ, Liu XS, Fox EA, Silver PA. Brodsky AS, et al. Among authors: meyer ca. Genome Biol. 2005;6(8):R64. doi: 10.1186/gb-2005-6-8-r64. Epub 2005 Jul 15. Genome Biol. 2005. PMID: 16086846 Free PMC article.

4

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription.

Swinburne IA, Meyer CA, Liu XS, Silver PA, Brodsky AS. Swinburne IA, et al. Among authors: meyer ca. Genome Res. 2006 Jul;16(7):912-21. doi: 10.1101/gr.5211806. Epub 2006 Jun 12. Genome Res. 2006. PMID: 16769980 Free PMC article.

5

Model-based analysis of tiling-arrays for ChIP-chip.

Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: meyer ca. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.

6

Genome-wide analysis of estrogen receptor binding sites.

Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Carroll JS, et al. Among authors: meyer ca. Nat Genet. 2006 Nov;38(11):1289-97. doi: 10.1038/ng1901. Epub 2006 Oct 1. Nat Genet. 2006. PMID: 17013392

7

Exon expression profiling reveals stimulus-mediated exon use in neural cells.

McKee AE, Neretti N, Carvalho LE, Meyer CA, Fox EA, Brodsky AS, Silver PA. McKee AE, et al. Among authors: meyer ca. Genome Biol. 2007;8(8):R159. doi: 10.1186/gb-2007-8-8-r159. Genome Biol. 2007. PMID: 17683528 Free PMC article.

8

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. Lupien M, et al. Among authors: meyer ca. Cell. 2008 Mar 21;132(6):958-70. doi: 10.1016/j.cell.2008.01.018. Cell. 2008. PMID: 18358809 Free PMC article.

9

Model-based analysis of ChIP-Seq (MACS).

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Among authors: meyer ca. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.

10

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers.

Eeckhoute J, Lupien M, Meyer CA, Verzi MP, Shivdasani RA, Liu XS, Brown M. Eeckhoute J, et al. Among authors: meyer ca. Genome Res. 2009 Mar;19(3):372-80. doi: 10.1101/gr.084582.108. Epub 2009 Jan 7. Genome Res. 2009. PMID: 19129543 Free PMC article.

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