Davis S - Search Results

1

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.

Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W. Durinck S, et al. Among authors: davis s. Bioinformatics. 2005 Aug 15;21(16):3439-40. doi: 10.1093/bioinformatics/bti525. Bioinformatics. 2005. PMID: 16082012

2

The Bioconductor channel in F1000Research.

Huber W, Carey V, Davis S, Hansen KD, Morgan M. Huber W, et al. Among authors: davis s. F1000Res. 2015 Jul 10;4:217. doi: 10.12688/f1000research.6758.2. eCollection 2015. F1000Res. 2015. PMID: 26998224 Free PMC article.

3

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.

Zhu Y, Davis S, Stephens R, Meltzer PS, Chen Y. Zhu Y, et al. Among authors: davis s. Bioinformatics. 2008 Dec 1;24(23):2798-800. doi: 10.1093/bioinformatics/btn520. Epub 2008 Oct 7. Bioinformatics. 2008. PMID: 18842599 Free PMC article.

4

GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.

Davis S, Meltzer PS. Davis S, et al. Bioinformatics. 2007 Jul 15;23(14):1846-7. doi: 10.1093/bioinformatics/btm254. Epub 2007 May 12. Bioinformatics. 2007. PMID: 17496320

5

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: davis s. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.

6

SRAdb: query and use public next-generation sequencing data from within R.

Zhu Y, Stephens RM, Meltzer PS, Davis SR. Zhu Y, et al. Among authors: davis sr. BMC Bioinformatics. 2013 Jan 17;14:19. doi: 10.1186/1471-2105-14-19. BMC Bioinformatics. 2013. PMID: 23323543 Free PMC article.

7

Toward a gold standard for benchmarking gene set enrichment analysis.

Geistlinger L, Csaba G, Santarelli M, Ramos M, Schiffer L, Turaga N, Law C, Davis S, Carey V, Morgan M, Zimmer R, Waldron L. Geistlinger L, et al. Among authors: davis s. Brief Bioinform. 2021 Jan 18;22(1):545-556. doi: 10.1093/bib/bbz158. Brief Bioinform. 2021. PMID: 32026945 Free PMC article.

8

RCircos: an R package for Circos 2D track plots.

Zhang H, Meltzer P, Davis S. Zhang H, et al. Among authors: davis s. BMC Bioinformatics. 2013 Aug 10;14:244. doi: 10.1186/1471-2105-14-244. BMC Bioinformatics. 2013. PMID: 23937229 Free PMC article.

9

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Scacheri PC, Crawford GE, Davis S. Scacheri PC, et al. Among authors: davis s. Methods Enzymol. 2006;411:270-82. doi: 10.1016/S0076-6879(06)11014-9. Methods Enzymol. 2006. PMID: 16939795 Review.

10

caOmicsV: an R package for visualizing multidimensional cancer genomic data.

Zhang H, Meltzer PS, Davis SR. Zhang H, et al. Among authors: davis sr. BMC Bioinformatics. 2016 Mar 22;17:141. doi: 10.1186/s12859-016-0989-6. BMC Bioinformatics. 2016. PMID: 27005934 Free PMC article.

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