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Page 1
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.
Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, Brinkac LM, Daugherty SC, Deboy R, Durkin AS, Giglio MG, Madupu R, Nelson WC, Rosovitz MJ, Sullivan S, Crabtree J, Creasy T, Davidsen T, Haft DH, Zafar N, Zhou L, Halpin R, Holley T, Khouri H, Feldblyum T, White O, Fraser CM, Chatterjee AK, Cartinhour S, Schneider DJ, Mansfield J, Collmer A, Buell CR. Joardar V, et al. Among authors: halpin r. J Bacteriol. 2005 Sep;187(18):6488-98. doi: 10.1128/JB.187.18.6488-6498.2005. J Bacteriol. 2005. PMID: 16159782 Free PMC article.
Comparative genomics of emerging human ehrlichiosis agents.
Dunning Hotopp JC, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Seshadri R, Ren Q, Wu M, Utterback TR, Smith S, Lewis M, Khouri H, Zhang C, Niu H, Lin Q, Ohashi N, Zhi N, Nelson W, Brinkac LM, Dodson RJ, Rosovitz MJ, Sundaram J, Daugherty SC, Davidsen T, Durkin AS, Gwinn M, Haft DH, Selengut JD, Sullivan SA, Zafar N, Zhou L, Benahmed F, Forberger H, Halpin R, Mulligan S, Robinson J, White O, Rikihisa Y, Tettelin H. Dunning Hotopp JC, et al. Among authors: halpin r. PLoS Genet. 2006 Feb;2(2):e21. doi: 10.1371/journal.pgen.0020021. Epub 2006 Feb 17. PLoS Genet. 2006. PMID: 16482227 Free PMC article.
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.
Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ, Durkin AS, Daugherty SC, Sullivan SA, Khouri H, Mohamoud Y, Halpin R, Paulsen IT. Palenik B, et al. Among authors: halpin r. Proc Natl Acad Sci U S A. 2006 Sep 5;103(36):13555-9. doi: 10.1073/pnas.0602963103. Epub 2006 Aug 25. Proc Natl Acad Sci U S A. 2006. PMID: 16938853 Free PMC article.
Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids.
Casjens SR, Mongodin EF, Qiu WG, Luft BJ, Schutzer SE, Gilcrease EB, Huang WM, Vujadinovic M, Aron JK, Vargas LC, Freeman S, Radune D, Weidman JF, Dimitrov GI, Khouri HM, Sosa JE, Halpin RA, Dunn JJ, Fraser CM. Casjens SR, et al. Among authors: halpin ra. PLoS One. 2012;7(3):e33280. doi: 10.1371/journal.pone.0033280. Epub 2012 Mar 14. PLoS One. 2012. PMID: 22432010 Free PMC article.
Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens.
Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D. Ismail AM, et al. Among authors: halpin r. Emerg Microbes Infect. 2018 Feb 7;7(1):10. doi: 10.1038/s41426-017-0004-y. Emerg Microbes Infect. 2018. PMID: 29410402 Free PMC article.
The tumor inflammation signature (TIS) is associated with anti-PD-1 treatment benefit in the CERTIM pan-cancer cohort.
Damotte D, Warren S, Arrondeau J, Boudou-Rouquette P, Mansuet-Lupo A, Biton J, Ouakrim H, Alifano M, Gervais C, Bellesoeur A, Kramkimel N, Tlemsani C, Burroni B, Duche A, Letourneur F, Si H, Halpin R, Creasy T, Herbst R, Ren X, Morel P, Cesano A, Goldwasser F, Leroy K. Damotte D, et al. Among authors: halpin r. J Transl Med. 2019 Nov 4;17(1):357. doi: 10.1186/s12967-019-2100-3. J Transl Med. 2019. PMID: 31684954 Free PMC article.
Viral genome sequencing by random priming methods.
Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ. Djikeng A, et al. Among authors: halpin r. BMC Genomics. 2008 Jan 7;9:5. doi: 10.1186/1471-2164-9-5. BMC Genomics. 2008. PMID: 18179705 Free PMC article.
Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa.
Nyaga MM, Jere KC, Esona MD, Seheri ML, Stucker KM, Halpin RA, Akopov A, Stockwell TB, Peenze I, Diop A, Ndiaye K, Boula A, Maphalala G, Berejena C, Mwenda JM, Steele AD, Wentworth DE, Mphahlele MJ. Nyaga MM, et al. Infect Genet Evol. 2015 Apr;31:321-34. doi: 10.1016/j.meegid.2015.02.011. Epub 2015 Feb 17. Infect Genet Evol. 2015. PMID: 25701122 Free PMC article.
Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data.
Lewis NS, Verhagen JH, Javakhishvili Z, Russell CA, Lexmond P, Westgeest KB, Bestebroer TM, Halpin RA, Lin X, Ransier A, Fedorova NB, Stockwell TB, Latorre-Margalef N, Olsen B, Smith G, Bahl J, Wentworth DE, Waldenström J, Fouchier RAM, de Graaf M. Lewis NS, et al. J Gen Virol. 2015 Aug;96(8):2050-2060. doi: 10.1099/vir.0.000155. Epub 2015 Apr 22. J Gen Virol. 2015. PMID: 25904147 Free PMC article.
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene.
Schobel SA, Stucker KM, Moore ML, Anderson LJ, Larkin EK, Shankar J, Bera J, Puri V, Shilts MH, Rosas-Salazar C, Halpin RA, Fedorova N, Shrivastava S, Stockwell TB, Peebles RS, Hartert TV, Das SR. Schobel SA, et al. Among authors: halpin ra. Sci Rep. 2016 May 23;6:26311. doi: 10.1038/srep26311. Sci Rep. 2016. PMID: 27212633 Free PMC article.
160 results