Schäffer AA - Search Results

1

Protein database searches using compositionally adjusted substitution matrices.

Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK. Altschul SF, et al. Among authors: schaffer aa. FEBS J. 2005 Oct;272(20):5101-9. doi: 10.1111/j.1742-4658.2005.04945.x. FEBS J. 2005. PMID: 16218944 Free PMC article. Review.

2

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Altschul SF, et al. Among authors: schaffer aa. Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389. Nucleic Acids Res. 1997. PMID: 9254694 Free PMC article. Review.

3

Genetic and physical mapping of the McKusick-Kaufman syndrome.

Stone DL, Agarwala R, Schäffer AA, Weber JL, Vaske D, Oda T, Chandrasekharappa SC, Francomano CA, Biesecker LG. Stone DL, et al. Among authors: schaffer aa. Hum Mol Genet. 1998 Mar;7(3):475-81. doi: 10.1093/hmg/7.3.475. Hum Mol Genet. 1998. PMID: 9467007

4

Software for constructing and verifying pedigrees within large genealogies and an application to the Old Order Amish of Lancaster County.

Agarwala R, Biesecker LG, Hopkins KA, Francomano CA, Schaffer AA. Agarwala R, et al. Among authors: schaffer aa. Genome Res. 1998 Mar;8(3):211-21. doi: 10.1101/gr.8.3.211. Genome Res. 1998. PMID: 9521925 Free article.

5

Protein sequence similarity searches using patterns as seeds.

Zhang Z, Schäffer AA, Miller W, Madden TL, Lipman DJ, Koonin EV, Altschul SF. Zhang Z, et al. Among authors: schaffer aa. Nucleic Acids Res. 1998 Sep 1;26(17):3986-90. doi: 10.1093/nar/26.17.3986. Nucleic Acids Res. 1998. PMID: 9705509 Free PMC article.

6

Towards a complete North American Anabaptist genealogy: A systematic approach to merging partially overlapping genealogy resources.

Agarwala R, Biesecker LG, Tomlin JF, Schäffer AA. Agarwala R, et al. Among authors: schaffer aa. Am J Med Genet. 1999 Sep 10;86(2):156-61. doi: 10.1002/(sici)1096-8628(19990910)86:2<156::aid-ajmg13>3.0.co;2-5. Am J Med Genet. 1999. PMID: 10449652

7

A fast and scalable radiation hybrid map construction and integration strategy.

Agarwala R, Applegate DL, Maglott D, Schuler GD, Schäffer AA. Agarwala R, et al. Among authors: schaffer aa. Genome Res. 2000 Mar;10(3):350-64. doi: 10.1101/gr.10.3.350. Genome Res. 2000. PMID: 10720576 Free PMC article.

8

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.

Schäffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF. Schäffer AA, et al. Bioinformatics. 1999 Dec;15(12):1000-11. doi: 10.1093/bioinformatics/15.12.1000. Bioinformatics. 1999. PMID: 10745990

9

A novel nemaline myopathy in the Amish caused by a mutation in troponin T1.

Johnston JJ, Kelley RI, Crawford TO, Morton DH, Agarwala R, Koch T, Schäffer AA, Francomano CA, Biesecker LG. Johnston JJ, et al. Among authors: schaffer aa. Am J Hum Genet. 2000 Oct;67(4):814-21. doi: 10.1086/303089. Epub 2000 Aug 21. Am J Hum Genet. 2000. PMID: 10952871 Free PMC article.

10

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF. Schäffer AA, et al. Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005. doi: 10.1093/nar/29.14.2994. Nucleic Acids Res. 2001. PMID: 11452024 Free PMC article. Review.

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