Li H - Search Results

1

Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis.

Jolly ER, Chin CS, Herskowitz I, Li H. Jolly ER, et al. Among authors: li h. BMC Bioinformatics. 2005 Nov 18;6:275. doi: 10.1186/1471-2105-6-275. BMC Bioinformatics. 2005. PMID: 16297241 Free PMC article.

2

Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence.

Chin CS, Chuang JH, Li H. Chin CS, et al. Among authors: li h. Genome Res. 2005 Feb;15(2):205-13. doi: 10.1101/gr.3243305. Epub 2005 Jan 14. Genome Res. 2005. PMID: 15653830 Free PMC article.

3

Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways.

Chin CS, Chubukov V, Jolly ER, DeRisi J, Li H. Chin CS, et al. Among authors: li h. PLoS Biol. 2008 Jun 17;6(6):e146. doi: 10.1371/journal.pbio.0060146. PLoS Biol. 2008. PMID: 18563967 Free PMC article.

4

Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation.

Wang W, Cherry JM, Nochomovitz Y, Jolly E, Botstein D, Li H. Wang W, et al. Among authors: li h. Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1998-2003. doi: 10.1073/pnas.0405537102. Epub 2005 Jan 31. Proc Natl Acad Sci U S A. 2005. PMID: 15684073 Free PMC article.

5

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

McCarroll SA, Murphy CT, Zou S, Pletcher SD, Chin CS, Jan YN, Kenyon C, Bargmann CI, Li H. McCarroll SA, et al. Among authors: li h. Nat Genet. 2004 Feb;36(2):197-204. doi: 10.1038/ng1291. Epub 2004 Jan 18. Nat Genet. 2004. PMID: 14730301

6

fREDUCE: detection of degenerate regulatory elements using correlation with expression.

Wu RZ, Chaivorapol C, Zheng J, Li H, Liang S. Wu RZ, et al. Among authors: li h. BMC Bioinformatics. 2007 Oct 17;8:399. doi: 10.1186/1471-2105-8-399. BMC Bioinformatics. 2007. PMID: 17941998 Free PMC article.

7

CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H. Chaivorapol C, et al. Among authors: li h. BMC Bioinformatics. 2008 Oct 27;9:455. doi: 10.1186/1471-2105-9-455. BMC Bioinformatics. 2008. PMID: 18950538 Free PMC article.

8

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis.

Fordyce PM, Gerber D, Tran D, Zheng J, Li H, DeRisi JL, Quake SR. Fordyce PM, et al. Among authors: li h. Nat Biotechnol. 2010 Sep;28(9):970-5. doi: 10.1038/nbt.1675. Epub 2010 Aug 29. Nat Biotechnol. 2010. PMID: 20802496 Free PMC article.

9

Computational approaches to identifying transcription factor binding sites in yeast genome.

Li H. Li H. Methods Enzymol. 2002;350:484-95. doi: 10.1016/s0076-6879(02)50980-0. Methods Enzymol. 2002. PMID: 12073331 No abstract available.

10

c-REDUCE: incorporating sequence conservation to detect motifs that correlate with expression.

Kechris K, Li H. Kechris K, et al. Among authors: li h. BMC Bioinformatics. 2008 Nov 28;9:506. doi: 10.1186/1471-2105-9-506. BMC Bioinformatics. 2008. PMID: 19040743 Free PMC article.

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