Rubio R - Search Results

1

Molecular processes during fat cell development revealed by gene expression profiling and functional annotation.

Hackl H, Burkard TR, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Hackl H, et al. Among authors: rubio r. Genome Biol. 2005;6(13):R108. doi: 10.1186/gb-2005-6-13-r108. Epub 2005 Dec 19. Genome Biol. 2005. PMID: 16420668 Free PMC article.

2

Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples.

Mar JC, Rubio R, Quackenbush J. Mar JC, et al. Among authors: rubio r. Genome Biol. 2006;7(12):R119. doi: 10.1186/gb-2006-7-12-r119. Genome Biol. 2006. PMID: 17169148 Free PMC article.

3

Inference and validation of predictive gene networks from biomedical literature and gene expression data.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J. Olsen C, et al. Among authors: rubio r. Genomics. 2014 May-Jun;103(5-6):329-36. doi: 10.1016/j.ygeno.2014.03.004. Epub 2014 Mar 29. Genomics. 2014. PMID: 24691108 Free PMC article.

4

Gene-environment interactions reveal a homeostatic role for cholesterol metabolism during dietary folate perturbation in mice.

Kitami T, Rubio R, O'Brien W, Quackenbush J, Nadeau JH. Kitami T, et al. Among authors: rubio r. Physiol Genomics. 2008 Oct 8;35(2):182-90. doi: 10.1152/physiolgenomics.00294.2007. Epub 2008 Aug 12. Physiol Genomics. 2008. PMID: 18697859 Free PMC article.

5

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB. April C, et al. Among authors: rubio r. PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162. PLoS One. 2009. PMID: 19997620 Free PMC article.

6

Comparative gene expression analysis in mouse models for multiple sclerosis, Alzheimer's disease and stroke for identifying commonly regulated and disease-specific gene changes.

Tseveleki V, Rubio R, Vamvakas SS, White J, Taoufik E, Petit E, Quackenbush J, Probert L. Tseveleki V, et al. Among authors: rubio r. Genomics. 2010 Aug;96(2):82-91. doi: 10.1016/j.ygeno.2010.04.004. Epub 2010 May 7. Genomics. 2010. PMID: 20435134 Free PMC article.

7

Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines.

Zhao B, Mar JC, Maruo S, Lee S, Gewurz BE, Johannsen E, Holton K, Rubio R, Takada K, Quackenbush J, Kieff E. Zhao B, et al. Among authors: rubio r. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):337-42. doi: 10.1073/pnas.1017419108. Epub 2010 Dec 20. Proc Natl Acad Sci U S A. 2011. PMID: 21173222 Free PMC article.

8

Using shRNA experiments to validate gene regulatory networks.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Quackenbush J, Haibe-Kains B. Olsen C, et al. Among authors: rubio r. Genom Data. 2015 Apr 1;4:123-6. doi: 10.1016/j.gdata.2015.03.011. eCollection 2015 Jun. Genom Data. 2015. PMID: 26484195 Free PMC article.

9

Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer.

Bentink S, Haibe-Kains B, Risch T, Fan JB, Hirsch MS, Holton K, Rubio R, April C, Chen J, Wickham-Garcia E, Liu J, Culhane A, Drapkin R, Quackenbush J, Matulonis UA. Bentink S, et al. Among authors: rubio r. PLoS One. 2012;7(2):e30269. doi: 10.1371/journal.pone.0030269. Epub 2012 Feb 13. PLoS One. 2012. PMID: 22348002 Free PMC article.

10

COLD-PCR enrichment of rare cancer mutations prior to targeted amplicon resequencing.

Milbury CA, Correll M, Quackenbush J, Rubio R, Makrigiorgos GM. Milbury CA, et al. Among authors: rubio r. Clin Chem. 2012 Mar;58(3):580-9. doi: 10.1373/clinchem.2011.176198. Epub 2011 Dec 21. Clin Chem. 2012. PMID: 22194627 Free PMC article.

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