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Page 1
Minimotif Miner: a tool for investigating protein function.
Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, Maciejewski MW, Gryk MR, Piccirillo B, Schiller SR, Schiller MR. Balla S, et al. Nat Methods. 2006 Mar;3(3):175-7. doi: 10.1038/nmeth856. Nat Methods. 2006. PMID: 16489333
Minimotif miner 2nd release: a database and web system for motif search.
Rajasekaran S, Balla S, Gradie P, Gryk MR, Kadaveru K, Kundeti V, Maciejewski MW, Mi T, Rubino N, Vyas J, Schiller MR. Rajasekaran S, et al. Among authors: balla s. Nucleic Acids Res. 2009 Jan;37(Database issue):D185-90. doi: 10.1093/nar/gkn865. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978024 Free PMC article.
High-performance exact algorithms for motif search.
Rajasekaran S, Balla S, Huang CH, Thapar V, Gryk M, Maciejewski M, Schiller M. Rajasekaran S, et al. Among authors: balla s. J Clin Monit Comput. 2005 Oct;19(4-5):319-28. doi: 10.1007/s10877-005-0677-y. J Clin Monit Comput. 2005. PMID: 16328946
Fast and practical algorithms for planted (l, d) motif search.
Davila J, Balla S, Rajasekaran S. Davila J, et al. Among authors: balla s. IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):544-52. doi: 10.1109/TCBB.2007.70241. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17975266
Exact algorithms for planted motif problems.
Rajasekaran S, Balla S, Huang CH. Rajasekaran S, et al. Among authors: balla s. J Comput Biol. 2005 Oct;12(8):1117-28. doi: 10.1089/cmb.2005.12.1117. J Comput Biol. 2005. PMID: 16241901
A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC. Robine N, et al. Among authors: balla s. Curr Biol. 2009 Dec 29;19(24):2066-76. doi: 10.1016/j.cub.2009.11.064. Curr Biol. 2009. PMID: 20022248 Free PMC article.
288 results