Perkins R - Search Results

1

Gene expression profile exploration of a large dataset on chronic fatigue syndrome.

Fang H, Xie Q, Boneva R, Fostel J, Perkins R, Tong W. Fang H, et al. Among authors: perkins r. Pharmacogenomics. 2006 Apr;7(3):429-40. doi: 10.2217/14622416.7.3.429. Pharmacogenomics. 2006. PMID: 16610953

2

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.

Fang H, Tong W, Perkins R, Shi L, Hong H, Cao X, Xie Q, Yim SH, Ward JM, Pitot HC, Dragan YP. Fang H, et al. Among authors: perkins r. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S6. doi: 10.1186/1471-2105-6-S2-S6. BMC Bioinformatics. 2005. PMID: 16026603 Free PMC article.

3

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.

Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, Han T, Fuscoe JC, Xu ZA, Patterson TA, Hong H, Xie Q, Perkins RG, Chen JJ, Casciano DA. Shi L, et al. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S12. doi: 10.1186/1471-2105-6-S2-S12. BMC Bioinformatics. 2005. PMID: 16026597 Free PMC article.

4

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential.

Shi L, Perkins RG, Fang H, Tong W. Shi L, et al. Curr Opin Biotechnol. 2008 Feb;19(1):10-8. doi: 10.1016/j.copbio.2007.11.003. Epub 2007 Dec 26. Curr Opin Biotechnol. 2008. PMID: 18155896 Review.

5

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.

Shi L, Jones WD, Jensen RV, Harris SC, Perkins RG, Goodsaid FM, Guo L, Croner LJ, Boysen C, Fang H, Qian F, Amur S, Bao W, Barbacioru CC, Bertholet V, Cao XM, Chu TM, Collins PJ, Fan XH, Frueh FW, Fuscoe JC, Guo X, Han J, Herman D, Hong H, Kawasaki ES, Li QZ, Luo Y, Ma Y, Mei N, Peterson RL, Puri RK, Shippy R, Su Z, Sun YA, Sun H, Thorn B, Turpaz Y, Wang C, Wang SJ, Warrington JA, Willey JC, Wu J, Xie Q, Zhang L, Zhang L, Zhong S, Wolfinger RD, Tong W. Shi L, et al. Among authors: perkins rg. BMC Bioinformatics. 2008 Aug 12;9 Suppl 9(Suppl 9):S10. doi: 10.1186/1471-2105-9-S9-S10. BMC Bioinformatics. 2008. PMID: 18793455 Free PMC article.

6

Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys.

Su Z, Li Z, Chen T, Li QZ, Fang H, Ding D, Ge W, Ning B, Hong H, Perkins RG, Tong W, Shi L. Su Z, et al. Chem Res Toxicol. 2011 Sep 19;24(9):1486-93. doi: 10.1021/tx200103b. Epub 2011 Aug 23. Chem Res Toxicol. 2011. PMID: 21834575

7

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D. Tong W, et al. Among authors: perkins r. Environ Health Perspect. 2003 Nov;111(15):1819-26. doi: 10.1289/ehp.6497. Environ Health Perspect. 2003. PMID: 14630514 Free PMC article. Review.

8

Development of public toxicogenomics software for microarray data management and analysis.

Tong W, Harris S, Cao X, Fang H, Shi L, Sun H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Casciano D. Tong W, et al. Among authors: perkins r. Mutat Res. 2004 May 18;549(1-2):241-53. doi: 10.1016/j.mrfmmm.2003.12.024. Mutat Res. 2004. PMID: 15120974

9

Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.

Hong H, Tong W, Perkins R, Fang H, Xie Q, Shi L. Hong H, et al. Among authors: perkins r. DNA Cell Biol. 2004 Oct;23(10):685-94. doi: 10.1089/dna.2004.23.685. DNA Cell Biol. 2004. PMID: 15585126

10

GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data.

Sun H, Fang H, Chen T, Perkins R, Tong W. Sun H, et al. Among authors: perkins r. BMC Bioinformatics. 2006 Sep 6;7 Suppl 2(Suppl 2):S23. doi: 10.1186/1471-2105-7-S2-S23. BMC Bioinformatics. 2006. PMID: 17118145 Free PMC article.

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