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Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel.
Bussey KJ, Chin K, Lababidi S, Reimers M, Reinhold WC, Kuo WL, Gwadry F, Ajay, Kouros-Mehr H, Fridlyand J, Jain A, Collins C, Nishizuka S, Tonon G, Roschke A, Gehlhaus K, Kirsch I, Scudiero DA, Gray JW, Weinstein JN. Bussey KJ, et al. Among authors: lababidi s. Mol Cancer Ther. 2006 Apr;5(4):853-67. doi: 10.1158/1535-7163.MCT-05-0155. Mol Cancer Ther. 2006. PMID: 16648555 Free PMC article.
Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling.
Nishizuka S, Chen ST, Gwadry FG, Alexander J, Major SM, Scherf U, Reinhold WC, Waltham M, Charboneau L, Young L, Bussey KJ, Kim S, Lababidi S, Lee JK, Pittaluga S, Scudiero DA, Sausville EA, Munson PJ, Petricoin EF 3rd, Liotta LA, Hewitt SM, Raffeld M, Weinstein JN. Nishizuka S, et al. Among authors: lababidi s. Cancer Res. 2003 Sep 1;63(17):5243-50. Cancer Res. 2003. PMID: 14500354
Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells.
Lee JK, Bussey KJ, Gwadry FG, Reinhold W, Riddick G, Pelletier SL, Nishizuka S, Szakacs G, Annereau JP, Shankavaram U, Lababidi S, Smith LH, Gottesman MM, Weinstein JN. Lee JK, et al. Among authors: lababidi s. Genome Biol. 2003;4(12):R82. doi: 10.1186/gb-2003-4-12-r82. Epub 2003 Nov 25. Genome Biol. 2003. PMID: 14659019 Free PMC article.
Karyotypic complexity of the NCI-60 drug-screening panel.
Roschke AV, Tonon G, Gehlhaus KS, McTyre N, Bussey KJ, Lababidi S, Scudiero DA, Weinstein JN, Kirsch IR. Roschke AV, et al. Among authors: lababidi s. Cancer Res. 2003 Dec 15;63(24):8634-47. Cancer Res. 2003. PMID: 14695175
Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells.
Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, Feinberg AP, Weinstein JN. Reinhold WC, et al. Among authors: lababidi s. Mol Cancer Ther. 2007 Feb;6(2):391-403. doi: 10.1158/1535-7163.MCT-06-0609. Epub 2007 Feb 1. Mol Cancer Ther. 2007. PMID: 17272646
Chromosomal instability is associated with higher expression of genes implicated in epithelial-mesenchymal transition, cancer invasiveness, and metastasis and with lower expression of genes involved in cell cycle checkpoints, DNA repair, and chromatin maintenance.
Roschke AV, Glebov OK, Lababidi S, Gehlhaus KS, Weinstein JN, Kirsch IR. Roschke AV, et al. Among authors: lababidi s. Neoplasia. 2008 Nov;10(11):1222-30. doi: 10.1593/neo.08682. Neoplasia. 2008. PMID: 18953431 Free PMC article.
Karyotypic "state" as a potential determinant for anticancer drug discovery.
Roschke AV, Lababidi S, Tonon G, Gehlhaus KS, Bussey K, Weinstein JN, Kirsch IR. Roschke AV, et al. Among authors: lababidi s. Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2964-9. doi: 10.1073/pnas.0405578102. Epub 2005 Feb 9. Proc Natl Acad Sci U S A. 2005. PMID: 15703300 Free PMC article.
GoMiner: a resource for biological interpretation of genomic and proteomic data.
Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN. Zeeberg BR, et al. Among authors: lababidi s. Genome Biol. 2003;4(4):R28. doi: 10.1186/gb-2003-4-4-r28. Epub 2003 Mar 25. Genome Biol. 2003. PMID: 12702209 Free PMC article.
56 results