Beveridge DL - Search Results

1

Root mean square deviation probability analysis of molecular dynamics trajectories on DNA.

Dixit SB, Ponomarev SY, Beveridge DL. Dixit SB, et al. Among authors: beveridge dl. J Chem Inf Model. 2006 May-Jun;46(3):1084-93. doi: 10.1021/ci0504925. J Chem Inf Model. 2006. PMID: 16711728

2

Toward a dynamical structure of DNA: comparison of theoretical and experimental NOE intensities.

Withka JM, Swaminathan S, Srinivasan J, Beveridge DL, Bolton PH. Withka JM, et al. Among authors: beveridge dl. Science. 1992 Jan 31;255(5044):597-9. doi: 10.1126/science.1736362. Science. 1992. PMID: 1736362

3

Comparison of the 13C relaxation times and proton scalar couplings of BPTI with values predicted by molecular dynamics.

Balasubramanian S, Nirmala R, Beveridge DL, Bolton PH. Balasubramanian S, et al. Among authors: beveridge dl. J Magn Reson B. 1994 Jul;104(3):240-9. doi: 10.1006/jmrb.1994.1081. J Magn Reson B. 1994. PMID: 7520814

4

Structure determination and analysis of local bending in an A-tract DNA duplex: comparison of results from crystallography, nuclear magnetic resonance, and molecular dynamics simulation on d(CGCAAAAATGCG).

Young MA, Srinivasan J, Goljer I, Kumar S, Beveridge DL, Bolton PH. Young MA, et al. Among authors: beveridge dl. Methods Enzymol. 1995;261:121-44. doi: 10.1016/s0076-6879(95)61007-3. Methods Enzymol. 1995. PMID: 8569492

5

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

Young MA, Ravishanker G, Beveridge DL. Young MA, et al. Among authors: beveridge dl. Biophys J. 1997 Nov;73(5):2313-36. doi: 10.1016/S0006-3495(97)78263-8. Biophys J. 1997. PMID: 9370428 Free PMC article.

6

Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature.

Sprous D, Young MA, Beveridge DL. Sprous D, et al. Among authors: beveridge dl. J Mol Biol. 1999 Jan 29;285(4):1623-32. doi: 10.1006/jmbi.1998.2241. J Mol Biol. 1999. PMID: 9917401

7

One nanosecond molecular dynamics simulation of the N-terminal domain of the lambda repressor protein.

Kombo DC, Young MA, Beveridge DL. Kombo DC, et al. Among authors: beveridge dl. Biopolymers. 2000 Jun;53(7):596-605. doi: 10.1002/(SICI)1097-0282(200006)53:7<596::AID-BIP6>3.0.CO;2-U. Biopolymers. 2000. PMID: 10766954

8

DNA structure: what's in charge?

McConnell KJ, Beveridge DL. McConnell KJ, et al. Among authors: beveridge dl. J Mol Biol. 2000 Dec 15;304(5):803-20. doi: 10.1006/jmbi.2000.4167. J Mol Biol. 2000. PMID: 11124028

9

Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex.

Blakaj DM, McConnell KJ, Beveridge DL, Baranger AM. Blakaj DM, et al. Among authors: beveridge dl. J Am Chem Soc. 2001 Mar 21;123(11):2548-51. doi: 10.1021/ja005538j. J Am Chem Soc. 2001. PMID: 11456923

10

Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.

McConnell KJ, Beveridge DL. McConnell KJ, et al. Among authors: beveridge dl. J Mol Biol. 2001 Nov 16;314(1):23-40. doi: 10.1006/jmbi.2001.4926. J Mol Biol. 2001. PMID: 11724529

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