Califano A - Search Results

1

ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A. Margolin AA, et al. Among authors: califano a. BMC Bioinformatics. 2006 Mar 20;7 Suppl 1(Suppl 1):S7. doi: 10.1186/1471-2105-7-S1-S7. BMC Bioinformatics. 2006. PMID: 16723010 Free PMC article.

2

Analysis of gene expression microarrays for phenotype classification.

Califano A, Stolovitzky G, Tu Y. Califano A, et al. Proc Int Conf Intell Syst Mol Biol. 2000;8:75-85. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977068

3

Systematic and fully automated identification of protein sequence patterns.

Hart RK, Royyuru AK, Stolovitzky G, Califano A. Hart RK, et al. Among authors: califano a. J Comput Biol. 2000;7(3-4):585-600. doi: 10.1089/106652700750050952. J Comput Biol. 2000. PMID: 11108480

4

Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells.

Klein U, Tu Y, Stolovitzky GA, Mattioli M, Cattoretti G, Husson H, Freedman A, Inghirami G, Cro L, Baldini L, Neri A, Califano A, Dalla-Favera R. Klein U, et al. Among authors: califano a. J Exp Med. 2001 Dec 3;194(11):1625-38. doi: 10.1084/jem.194.11.1625. J Exp Med. 2001. PMID: 11733577 Free PMC article.

5

Prediction of central nervous system embryonal tumour outcome based on gene expression.

Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, McLaughlin ME, Kim JY, Goumnerova LC, Black PM, Lau C, Allen JC, Zagzag D, Olson JM, Curran T, Wetmore C, Biegel JA, Poggio T, Mukherjee S, Rifkin R, Califano A, Stolovitzky G, Louis DN, Mesirov JP, Lander ES, Golub TR. Pomeroy SL, et al. Among authors: califano a. Nature. 2002 Jan 24;415(6870):436-42. doi: 10.1038/415436a. Nature. 2002. PMID: 11807556

6

Identification of Hodgkin and Reed-Sternberg cell-specific genes by gene expression profiling.

Küppers R, Klein U, Schwering I, Distler V, Bräuninger A, Cattoretti G, Tu Y, Stolovitzky GA, Califano A, Hansmann ML, Dalla-Favera R. Küppers R, et al. Among authors: califano a. J Clin Invest. 2003 Feb;111(4):529-37. doi: 10.1172/JCI16624. J Clin Invest. 2003. PMID: 12588891 Free PMC article.

7

Transcriptional analysis of the B cell germinal center reaction.

Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R. Klein U, et al. Among authors: califano a. Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2639-44. doi: 10.1073/pnas.0437996100. Epub 2003 Feb 25. Proc Natl Acad Sci U S A. 2003. PMID: 12604779 Free PMC article.

8

Motif-based construction of a functional map for mammalian olfactory receptors.

Liu AH, Zhang X, Stolovitzky GA, Califano A, Firestein SJ. Liu AH, et al. Among authors: califano a. Genomics. 2003 May;81(5):443-56. doi: 10.1016/s0888-7543(03)00022-3. Genomics. 2003. PMID: 12706103

9

Gene expression dynamics during germinal center transit in B cells.

Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R. Klein U, et al. Among authors: califano a. Ann N Y Acad Sci. 2003 Apr;987:166-72. doi: 10.1111/j.1749-6632.2003.tb06045.x. Ann N Y Acad Sci. 2003. PMID: 12727636 Review.

10

Gene expression profiling of hairy cell leukemia reveals a phenotype related to memory B cells with altered expression of chemokine and adhesion receptors.

Basso K, Liso A, Tiacci E, Benedetti R, Pulsoni A, Foa R, Di Raimondo F, Ambrosetti A, Califano A, Klein U, Dalla Favera R, Falini B. Basso K, et al. Among authors: califano a. J Exp Med. 2004 Jan 5;199(1):59-68. doi: 10.1084/jem.20031175. J Exp Med. 2004. PMID: 14707115 Free PMC article.

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