Kosakovsky Pond SL - Search Results

1

Evidence for positive selection on a sexual reproduction gene in the diatom genus Thalassiosira (Bacillariophyta).

Sorhannus U, Kosakovsky Pond SL. Sorhannus U, et al. Among authors: kosakovsky pond sl. J Mol Evol. 2006 Aug;63(2):231-9. doi: 10.1007/s00239-006-0016-z. Epub 2006 Jul 7. J Mol Evol. 2006. PMID: 16830090

2

Not so different after all: a comparison of methods for detecting amino acid sites under selection.

Kosakovsky Pond SL, Frost SD. Kosakovsky Pond SL, et al. Mol Biol Evol. 2005 May;22(5):1208-22. doi: 10.1093/molbev/msi105. Epub 2005 Feb 9. Mol Biol Evol. 2005. PMID: 15703242

3

Automated phylogenetic detection of recombination using a genetic algorithm.

Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. Kosakovsky Pond SL, et al. Mol Biol Evol. 2006 Oct;23(10):1891-901. doi: 10.1093/molbev/msl051. Epub 2006 Jul 3. Mol Biol Evol. 2006. PMID: 16818476

4

Evolutionary model selection with a genetic algorithm: a case study using stem RNA.

Kosakovsky Pond SL, Mannino FV, Gravenor MB, Muse SV, Frost SD. Kosakovsky Pond SL, et al. Mol Biol Evol. 2007 Jan;24(1):159-70. doi: 10.1093/molbev/msl144. Epub 2006 Oct 12. Mol Biol Evol. 2007. PMID: 17038448

5

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

Kosakovsky Pond SL, Poon AF, Leigh Brown AJ, Frost SD. Kosakovsky Pond SL, et al. Mol Biol Evol. 2008 Sep;25(9):1809-24. doi: 10.1093/molbev/msn123. Epub 2008 May 29. Mol Biol Evol. 2008. PMID: 18511426 Free PMC article.

6

A random effects branch-site model for detecting episodic diversifying selection.

Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, Scheffler K. Kosakovsky Pond SL, et al. Mol Biol Evol. 2011 Nov;28(11):3033-43. doi: 10.1093/molbev/msr125. Epub 2011 Jun 13. Mol Biol Evol. 2011. PMID: 21670087 Free PMC article.

7

Purifying selection can obscure the ancient age of viral lineages.

Wertheim JO, Kosakovsky Pond SL. Wertheim JO, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2011 Dec;28(12):3355-65. doi: 10.1093/molbev/msr170. Epub 2011 Jun 24. Mol Biol Evol. 2011. PMID: 21705379 Free PMC article.

8

Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy.

Wertheim JO, Fourment M, Kosakovsky Pond SL. Wertheim JO, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2012 Feb;29(2):451-6. doi: 10.1093/molbev/msr266. Epub 2011 Oct 31. Mol Biol Evol. 2012. PMID: 22045998 Free PMC article.

9

FUBAR: a fast, unconstrained bayesian approximation for inferring selection.

Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. Murrell B, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2013 May;30(5):1196-205. doi: 10.1093/molbev/mst030. Epub 2013 Feb 18. Mol Biol Evol. 2013. PMID: 23420840 Free PMC article.

10

Evolutionary origins of human herpes simplex viruses 1 and 2.

Wertheim JO, Smith MD, Smith DM, Scheffler K, Kosakovsky Pond SL. Wertheim JO, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2014 Sep;31(9):2356-64. doi: 10.1093/molbev/msu185. Epub 2014 Jun 10. Mol Biol Evol. 2014. PMID: 24916030 Free PMC article.

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