Ode H - Search Results

1

Resistant mechanism against nelfinavir of human immunodeficiency virus type 1 proteases.

Ode H, Ota M, Neya S, Hata M, Sugiura W, Hoshino T. Ode H, et al. J Phys Chem B. 2005 Jan 13;109(1):565-74. doi: 10.1021/jp046860+. J Phys Chem B. 2005. PMID: 16851048

2

Computational simulations of HIV-1 proteases--multi-drug resistance due to nonactive site mutation L90M.

Ode H, Neya S, Hata M, Sugiura W, Hoshino T. Ode H, et al. J Am Chem Soc. 2006 Jun 21;128(24):7887-95. doi: 10.1021/ja060682b. J Am Chem Soc. 2006. PMID: 16771502

3

Mechanism of drug resistance due to N88S in CRF01_AE HIV-1 protease, analyzed by molecular dynamics simulations.

Ode H, Matsuyama S, Hata M, Hoshino T, Kakizawa J, Sugiura W. Ode H, et al. J Med Chem. 2007 Apr 19;50(8):1768-77. doi: 10.1021/jm061158i. Epub 2007 Mar 17. J Med Chem. 2007. PMID: 17367119

4

Computational characterization of structural role of the non-active site mutation M36I of human immunodeficiency virus type 1 protease.

Ode H, Matsuyama S, Hata M, Neya S, Kakizawa J, Sugiura W, Hoshino T. Ode H, et al. J Mol Biol. 2007 Jul 13;370(3):598-607. doi: 10.1016/j.jmb.2007.04.081. Epub 2007 May 10. J Mol Biol. 2007. PMID: 17524421

5

Force field parameters for rotation around chi torsion axis in nucleic acids.

Ode H, Matsuo Y, Neya S, Hoshino T. Ode H, et al. J Comput Chem. 2008 Nov 30;29(15):2531-42. doi: 10.1002/jcc.21006. J Comput Chem. 2008. PMID: 18470965

6

Functional evaluation of iron oxypyriporphyrin in protein heme pocket.

Neya S, Suzuki M, Ode H, Hoshino T, Furutani Y, Kandori H, Hori H, Imai K, Komatsu T. Neya S, et al. Among authors: ode h. Inorg Chem. 2008 Nov 17;47(22):10771-8. doi: 10.1021/ic801406x. Epub 2008 Oct 10. Inorg Chem. 2008. PMID: 18844346

7

Structural and energetic analysis on the complexes of clinically isolated subtype C HIV-1 proteases and approved inhibitors by molecular dynamics simulation.

Matsuyama S, Aydan A, Ode H, Hata M, Sugiura W, Hoshino T. Matsuyama S, et al. Among authors: ode h. J Phys Chem B. 2010 Jan 14;114(1):521-30. doi: 10.1021/jp908314f. J Phys Chem B. 2010. PMID: 20055526

8

Molecular insight into intrinsic heme distortion in ligand binding in hemoprotein.

Neya S, Suzuki M, Hoshino T, Ode H, Imai K, Komatsu T, Ikezaki A, Nakamura M, Furutani Y, Kandori H. Neya S, et al. Among authors: ode h. Biochemistry. 2010 Jul 13;49(27):5642-50. doi: 10.1021/bi1003553. Biochemistry. 2010. PMID: 20536131

9

Within-host co-evolution of Gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV-1 case.

Shibata J, Sugiura W, Ode H, Iwatani Y, Sato H, Tsang H, Matsuda M, Hasegawa N, Ren F, Tanaka H. Shibata J, et al. Among authors: ode h. Antiviral Res. 2011 Apr;90(1):33-41. doi: 10.1016/j.antiviral.2011.02.004. Epub 2011 Feb 19. Antiviral Res. 2011. PMID: 21338625

10

Molecular and enzymatic characterization of XMRV protease by a cell-free proteolytic analysis.

Matsunaga S, Sawasaki T, Ode H, Morishita R, Furukawa A, Sakuma R, Sugiura W, Sato H, Katahira M, Takaori-Kondo A, Yamamoto N, Ryo A. Matsunaga S, et al. Among authors: ode h. J Proteomics. 2012 Aug 3;75(15):4863-73. doi: 10.1016/j.jprot.2012.05.047. Epub 2012 Jun 9. J Proteomics. 2012. PMID: 22687250

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