Patil KR - Search Results

1

Integration of metabolome data with metabolic networks reveals reporter reactions.

Cakir T, Patil KR, Onsan Zi, Ulgen KO, Kirdar B, Nielsen J. Cakir T, et al. Among authors: patil kr. Mol Syst Biol. 2006;2:50. doi: 10.1038/msb4100085. Epub 2006 Oct 3. Mol Syst Biol. 2006. PMID: 17016516 Free PMC article.

2

Use of genome-scale microbial models for metabolic engineering.

Patil KR, Akesson M, Nielsen J. Patil KR, et al. Curr Opin Biotechnol. 2004 Feb;15(1):64-9. doi: 10.1016/j.copbio.2003.11.003. Curr Opin Biotechnol. 2004. PMID: 15102469 Review.

3

Uncovering transcriptional regulation of metabolism by using metabolic network topology.

Patil KR, Nielsen J. Patil KR, et al. Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2685-9. doi: 10.1073/pnas.0406811102. Epub 2005 Feb 14. Proc Natl Acad Sci U S A. 2005. PMID: 15710883 Free PMC article.

4

Evolutionary programming as a platform for in silico metabolic engineering.

Patil KR, Rocha I, Förster J, Nielsen J. Patil KR, et al. BMC Bioinformatics. 2005 Dec 23;6:308. doi: 10.1186/1471-2105-6-308. BMC Bioinformatics. 2005. PMID: 16375763 Free PMC article.

5

Hap4 is not essential for activation of respiration at low specific growth rates in Saccharomyces cerevisiae.

Raghevendran V, Patil KR, Olsson L, Nielsen J. Raghevendran V, et al. Among authors: patil kr. J Biol Chem. 2006 May 5;281(18):12308-14. doi: 10.1074/jbc.M512972200. Epub 2006 Mar 7. J Biol Chem. 2006. PMID: 16522629 Free article.

6

Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation.

Usaite R, Patil KR, Grotkjaer T, Nielsen J, Regenberg B. Usaite R, et al. Among authors: patil kr. Appl Environ Microbiol. 2006 Sep;72(9):6194-203. doi: 10.1128/AEM.00548-06. Appl Environ Microbiol. 2006. PMID: 16957246 Free PMC article.

7

The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.

Baxter CJ, Redestig H, Schauer N, Repsilber D, Patil KR, Nielsen J, Selbig J, Liu J, Fernie AR, Sweetlove LJ. Baxter CJ, et al. Among authors: patil kr. Plant Physiol. 2007 Jan;143(1):312-25. doi: 10.1104/pp.106.090431. Epub 2006 Nov 22. Plant Physiol. 2007. PMID: 17122072 Free PMC article.

8

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks.

Oliveira AP, Patil KR, Nielsen J. Oliveira AP, et al. Among authors: patil kr. BMC Syst Biol. 2008 Feb 8;2:17. doi: 10.1186/1752-0509-2-17. BMC Syst Biol. 2008. PMID: 18261202 Free PMC article.

9

Natural computation meta-heuristics for the in silico optimization of microbial strains.

Rocha M, Maia P, Mendes R, Pinto JP, Ferreira EC, Nielsen J, Patil KR, Rocha I. Rocha M, et al. Among authors: patil kr. BMC Bioinformatics. 2008 Nov 27;9:499. doi: 10.1186/1471-2105-9-499. BMC Bioinformatics. 2008. PMID: 19038030 Free PMC article.

10

Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3.

Cimini D, Patil KR, Schiraldi C, Nielsen J. Cimini D, et al. Among authors: patil kr. BMC Syst Biol. 2009 Feb 6;3:17. doi: 10.1186/1752-0509-3-17. BMC Syst Biol. 2009. PMID: 19200357 Free PMC article.

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