McDonald WH - Search Results

1

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

Pan C, Kora G, McDonald WH, Tabb DL, VerBerkmoes NC, Hurst GB, Pelletier DA, Samatova NF, Hettich RL. Pan C, et al. Among authors: mcdonald wh. Anal Chem. 2006 Oct 15;78(20):7121-31. doi: 10.1021/ac060654b. Anal Chem. 2006. PMID: 17037911

2

MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

Tabb DL, Thompson MR, Khalsa-Moyers G, VerBerkmoes NC, McDonald WH. Tabb DL, et al. Among authors: mcdonald wh. J Am Soc Mass Spectrom. 2005 Aug;16(8):1250-61. doi: 10.1016/j.jasms.2005.04.010. J Am Soc Mass Spectrom. 2005. PMID: 15979332 Free article.

3

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

Pan C, Kora G, Tabb DL, Pelletier DA, McDonald WH, Hurst GB, Hettich RL, Samatova NF. Pan C, et al. Among authors: mcdonald wh. Anal Chem. 2006 Oct 15;78(20):7110-20. doi: 10.1021/ac0606554. Anal Chem. 2006. PMID: 17037910

4

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

Pan C, Park BH, McDonald WH, Carey PA, Banfield JF, VerBerkmoes NC, Hettich RL, Samatova NF. Pan C, et al. Among authors: mcdonald wh. BMC Bioinformatics. 2010 Mar 5;11:118. doi: 10.1186/1471-2105-11-118. BMC Bioinformatics. 2010. PMID: 20205730 Free PMC article.

5

Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states.

VerBerkmoes NC, Shah MB, Lankford PK, Pelletier DA, Strader MB, Tabb DL, McDonald WH, Barton JW, Hurst GB, Hauser L, Davison BH, Beatty JT, Harwood CS, Tabita FR, Hettich RL, Larimer FW. VerBerkmoes NC, et al. Among authors: mcdonald wh. J Proteome Res. 2006 Feb;5(2):287-98. doi: 10.1021/pr0503230. J Proteome Res. 2006. PMID: 16457594

6

Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.

Hervey WJ 4th, Khalsa-Moyers G, Lankford PK, Owens ET, McKeown CK, Lu TY, Foote LJ, Asano KG, Morrell-Falvey JL, McDonald WH, Pelletier DA, Hurst GB. Hervey WJ 4th, et al. Among authors: mcdonald wh. J Proteome Res. 2009 Jul;8(7):3675-88. doi: 10.1021/pr801088f. J Proteome Res. 2009. PMID: 19459691

7

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.

Tabb DL, McDonald WH, Yates JR 3rd. Tabb DL, et al. Among authors: mcdonald wh. J Proteome Res. 2002 Jan-Feb;1(1):21-6. doi: 10.1021/pr015504q. J Proteome Res. 2002. PMID: 12643522 Free PMC article.

8

Expressed peptide tags: an additional layer of data for genome annotation.

Savidor A, Donahoo RS, Hurtado-Gonzales O, Verberkmoes NC, Shah MB, Lamour KH, McDonald WH. Savidor A, et al. Among authors: mcdonald wh. J Proteome Res. 2006 Nov;5(11):3048-58. doi: 10.1021/pr060134x. J Proteome Res. 2006. PMID: 17081056

9

Dual-tagging system for the affinity purification of mammalian protein complexes.

Giannone RJ, McDonald WH, Hurst GB, Huang Y, Wu J, Liu Y, Wang Y. Giannone RJ, et al. Among authors: mcdonald wh. Biotechniques. 2007 Sep;43(3):296, 298, 300 passim. doi: 10.2144/000112550. Biotechniques. 2007. PMID: 17907572 Free article.

10

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Sharp JL, Anderson KK, Hurst GB, Daly DS, Pelletier DA, Cannon WR, Auberry DL, Schmoyer DD, McDonald WH, White AM, Hooker BS, Victry KD, Buchanan MV, Kery V, Wiley HS. Sharp JL, et al. Among authors: mcdonald wh. J Proteome Res. 2007 Sep;6(9):3788-95. doi: 10.1021/pr0701106. Epub 2007 Aug 11. J Proteome Res. 2007. PMID: 17691832

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