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Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior.
Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor MI, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove LJ, Fernie AR. Carrari F, et al. Among authors: usadel b. Plant Physiol. 2006 Dec;142(4):1380-96. doi: 10.1104/pp.106.088534. Epub 2006 Oct 27. Plant Physiol. 2006. PMID: 17071647 Free PMC article.
[email protected]: the Golm Metabolome Database.
Kopka J, Schauer N, Krueger S, Birkemeyer C, Usadel B, Bergmüller E, Dörmann P, Weckwerth W, Gibon Y, Stitt M, Willmitzer L, Fernie AR, Steinhauser D. Kopka J, et al. Among authors: usadel b. Bioinformatics. 2005 Apr 15;21(8):1635-8. doi: 10.1093/bioinformatics/bti236. Epub 2004 Dec 21. Bioinformatics. 2005. PMID: 15613389
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M. Usadel B, et al. Plant Physiol. 2005 Jul;138(3):1195-204. doi: 10.1104/pp.105.060459. Plant Physiol. 2005. PMID: 16009995 Free PMC article. Review.
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf.
Urbanczyk-Wochniak E, Usadel B, Thimm O, Nunes-Nesi A, Carrari F, Davy M, Bläsing O, Kowalczyk M, Weicht D, Polinceusz A, Meyer S, Stitt M, Fernie AR. Urbanczyk-Wochniak E, et al. Among authors: usadel b. Plant Mol Biol. 2006 Mar;60(5):773-92. doi: 10.1007/s11103-005-5772-4. Plant Mol Biol. 2006. PMID: 16649112
190 results