Takada S - Search Results

1

Secondary structure provides a template for the folding of nearby polypeptides.

Kameda T, Takada S. Kameda T, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17765-70. doi: 10.1073/pnas.0602632103. Epub 2006 Nov 13. Proc Natl Acad Sci U S A. 2006. PMID: 17101976 Free PMC article.

2

De novo design of foldable proteins with smooth folding funnel: automated negative design and experimental verification.

Jin W, Kambara O, Sasakawa H, Tamura A, Takada S. Jin W, et al. Among authors: takada s. Structure. 2003 May;11(5):581-90. doi: 10.1016/s0969-2126(03)00075-3. Structure. 2003. PMID: 12737823 Free article.

3

How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: molecular simulations.

Takagi F, Koga N, Takada S. Takagi F, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11367-72. doi: 10.1073/pnas.1831920100. Epub 2003 Aug 28. Proc Natl Acad Sci U S A. 2003. PMID: 12947041 Free PMC article.

4

Optimizing physical energy functions for protein folding.

Fujitsuka Y, Takada S, Luthey-Schulten ZA, Wolynes PG. Fujitsuka Y, et al. Among authors: takada s. Proteins. 2004 Jan 1;54(1):88-103. doi: 10.1002/prot.10429. Proteins. 2004. PMID: 14705026

5

Protein grabs a ligand by extending anchor residues: molecular simulation for Ca2+ binding to calmodulin loop.

Kobayashi C, Takada S. Kobayashi C, et al. Among authors: takada s. Biophys J. 2006 May 1;90(9):3043-51. doi: 10.1529/biophysj.105.078071. Epub 2006 Feb 10. Biophys J. 2006. PMID: 16473902 Free PMC article.

6

Shaping up the protein folding funnel by local interaction: lesson from a structure prediction study.

Chikenji G, Fujitsuka Y, Takada S. Chikenji G, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3141-6. doi: 10.1073/pnas.0508195103. Epub 2006 Feb 17. Proc Natl Acad Sci U S A. 2006. PMID: 16488978 Free PMC article.

7

Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase.

Koga N, Takada S. Koga N, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5367-72. doi: 10.1073/pnas.0509642103. Epub 2006 Mar 27. Proc Natl Acad Sci U S A. 2006. PMID: 16567655 Free PMC article.

8

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations.

Okazaki K, Koga N, Takada S, Onuchic JN, Wolynes PG. Okazaki K, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):11844-9. doi: 10.1073/pnas.0604375103. Epub 2006 Jul 28. Proc Natl Acad Sci U S A. 2006. PMID: 16877541 Free PMC article.

9

In silico chaperonin-like cycle helps folding of proteins for structure prediction.

Furuta T, Fujitsuka Y, Chikenji G, Takada S. Furuta T, et al. Among authors: takada s. Biophys J. 2008 Apr 1;94(7):2558-65. doi: 10.1529/biophysj.107.115261. Epub 2008 Jan 4. Biophys J. 2008. PMID: 18178656 Free PMC article.

10

Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms.

Okazaki K, Takada S. Okazaki K, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11182-7. doi: 10.1073/pnas.0802524105. Epub 2008 Aug 4. Proc Natl Acad Sci U S A. 2008. PMID: 18678900 Free PMC article.

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