Baran R - Search Results

1

MathDAMP: a package for differential analysis of metabolite profiles.

Baran R, Kochi H, Saito N, Suematsu M, Soga T, Nishioka T, Robert M, Tomita M. Baran R, et al. BMC Bioinformatics. 2006 Dec 13;7:530. doi: 10.1186/1471-2105-7-530. BMC Bioinformatics. 2006. PMID: 17166258 Free PMC article.

2

Visualization of three-way comparisons of omics data.

Baran R, Robert M, Suematsu M, Soga T, Tomita M. Baran R, et al. BMC Bioinformatics. 2007 Mar 5;8:72. doi: 10.1186/1471-2105-8-72. BMC Bioinformatics. 2007. PMID: 17335588 Free PMC article.

3

Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption.

Soga T, Baran R, Suematsu M, Ueno Y, Ikeda S, Sakurakawa T, Kakazu Y, Ishikawa T, Robert M, Nishioka T, Tomita M. Soga T, et al. Among authors: baran r. J Biol Chem. 2006 Jun 16;281(24):16768-76. doi: 10.1074/jbc.M601876200. Epub 2006 Apr 11. J Biol Chem. 2006. PMID: 16608839 Free article.

4

Metabolomics approach for enzyme discovery.

Saito N, Robert M, Kitamura S, Baran R, Soga T, Mori H, Nishioka T, Tomita M. Saito N, et al. Among authors: baran r. J Proteome Res. 2006 Aug;5(8):1979-87. doi: 10.1021/pr0600576. J Proteome Res. 2006. PMID: 16889420

5

Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes.

Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Kosina SM, et al. Among authors: baran r. BMC Microbiol. 2018 Sep 12;18(1):115. doi: 10.1186/s12866-018-1256-y. BMC Microbiol. 2018. PMID: 30208844 Free PMC article.

6

Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.

Baran R, Ivanova NN, Jose N, Garcia-Pichel F, Kyrpides NC, Gugger M, Northen TR. Baran R, et al. Mar Drugs. 2013 Sep 30;11(10):3617-31. doi: 10.3390/md11103617. Mar Drugs. 2013. PMID: 24084783 Free PMC article.

7

Improved genome annotation through untargeted detection of pathway-specific metabolites.

Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Bowen BP, et al. Among authors: baran r. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2164-12-S1-S6. BMC Genomics. 2011. PMID: 21810208 Free PMC article.

8

Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling.

Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Baran R, et al. Anal Chem. 2010 Nov 1;82(21):9034-42. doi: 10.1021/ac1020112. Epub 2010 Oct 14. Anal Chem. 2010. PMID: 20945921

9

Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.

Baran R, Bowen BP, Northen TR. Baran R, et al. Mol Biosyst. 2011 Dec;7(12):3200-6. doi: 10.1039/c1mb05196b. Epub 2011 Sep 21. Mol Biosyst. 2011. PMID: 21935552

10

Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.

Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Baran R, et al. ACS Chem Biol. 2013 Jan 18;8(1):189-99. doi: 10.1021/cb300477w. Epub 2012 Oct 31. ACS Chem Biol. 2013. PMID: 23082955

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