Shibata R - Search Results

1

Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions.

Tanaka H, Umehara T, Inaka K, Takahashi S, Shibata R, Bessho Y, Sato M, Sugiyama S, Fusatomi E, Terada T, Shirouzu M, Sano S, Motohara M, Kobayashi T, Tanaka T, Tanaka A, Yokoyama S. Tanaka H, et al. Among authors: shibata r. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Feb 1;63(Pt 2):69-73. doi: 10.1107/S1744309106054625. Epub 2007 Jan 17. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007. PMID: 17277442 Free PMC article.

2

Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA.

Shibata R, Bessho Y, Shinkai A, Nishimoto M, Fusatomi E, Terada T, Shirouzu M, Yokoyama S. Shibata R, et al. Biochem Biophys Res Commun. 2007 Mar 30;355(1):122-8. doi: 10.1016/j.bbrc.2007.01.119. Epub 2007 Jan 31. Biochem Biophys Res Commun. 2007. PMID: 17288993

3

Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis.

Goto-Ito S, Ishii R, Ito T, Shibata R, Fusatomi E, Sekine SI, Bessho Y, Yokoyama S. Goto-Ito S, et al. Among authors: shibata r. Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1059-68. doi: 10.1107/S0907444907040668. Epub 2007 Sep 19. Acta Crystallogr D Biol Crystallogr. 2007. PMID: 17881823

4

Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution.

Kukimoto-Niino M, Shibata R, Murayama K, Hamana H, Nishimoto M, Bessho Y, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S. Kukimoto-Niino M, et al. Among authors: shibata r. Protein Sci. 2005 Mar;14(3):823-7. doi: 10.1110/ps.041229405. Epub 2005 Feb 2. Protein Sci. 2005. PMID: 15689504 Free PMC article.

5

Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.

Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S. Bessho Y, et al. Among authors: shibata r. Proc Natl Acad Sci U S A. 2007 May 15;104(20):8293-8. doi: 10.1073/pnas.0700402104. Epub 2007 May 8. Proc Natl Acad Sci U S A. 2007. PMID: 17488812 Free PMC article.

6

Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine.

Kuratani M, Yanagisawa T, Ishii R, Matsuno M, Si SY, Katsura K, Ushikoshi-Nakayama R, Shibata R, Shirouzu M, Bessho Y, Yokoyama S. Kuratani M, et al. Among authors: shibata r. J Struct Funct Genomics. 2014 Sep;15(3):173-80. doi: 10.1007/s10969-014-9183-0. Epub 2014 Jun 4. J Struct Funct Genomics. 2014. PMID: 24894648 Free PMC article.

7

Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.

Hattori M, Mizohata E, Tatsuguchi A, Shibata R, Kishishita S, Murayama K, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S. Hattori M, et al. Among authors: shibata r. Proteins. 2006 Jul 1;64(1):284-7. doi: 10.1002/prot.20937. Proteins. 2006. PMID: 16680676 No abstract available.

8

Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.

Dong X, Bessho Y, Shibata R, Nishimoto M, Shirouzu M, Kuramitsu S, Yokoyama S. Dong X, et al. Among authors: shibata r. RNA Biol. 2006 Jul;3(3):115-22. doi: 10.4161/rna.3.3.3286. Epub 2006 Jul 17. RNA Biol. 2006. PMID: 17114947 Free article.

9

Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine.

Kuratani M, Yoshikawa Y, Bessho Y, Higashijima K, Ishii T, Shibata R, Takahashi S, Yutani K, Yokoyama S. Kuratani M, et al. Among authors: shibata r. Structure. 2007 Dec;15(12):1642-53. doi: 10.1016/j.str.2007.09.020. Structure. 2007. PMID: 18073113 Free article.

10

Characterization and structure of the Aquifex aeolicus protein DUF752: a bacterial tRNA-methyltransferase (MnmC2) functioning without the usually fused oxidase domain (MnmC1).

Kitamura A, Nishimoto M, Sengoku T, Shibata R, Jäger G, Björk GR, Grosjean H, Yokoyama S, Bessho Y. Kitamura A, et al. Among authors: shibata r. J Biol Chem. 2012 Dec 21;287(52):43950-60. doi: 10.1074/jbc.M112.409300. Epub 2012 Oct 22. J Biol Chem. 2012. PMID: 23091054 Free PMC article.

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