Kahn A - Search Results

1

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, Chary KK, Reimers MA, Scherf U, Kahn A, Dolginow D, Cossman J, Kaldjian EP, Scudiero DA, Petricoin E, Liotta L, Lee JK, Weinstein JN. Shankavaram UT, et al. Among authors: kahn a. Mol Cancer Ther. 2007 Mar;6(3):820-32. doi: 10.1158/1535-7163.MCT-06-0650. Epub 2007 Mar 5. Mol Cancer Ther. 2007. PMID: 17339364

2

Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples.

Zeeberg BR, Kohn KW, Kahn A, Larionov V, Weinstein JN, Reinhold W, Pommier Y. Zeeberg BR, et al. Among authors: kahn a. PLoS One. 2012;7(7):e40062. doi: 10.1371/journal.pone.0040062. Epub 2012 Jul 26. PLoS One. 2012. PMID: 22848369 Free PMC article.

3

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.

Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN. Liu H, et al. Among authors: kahn a. Bioinformatics. 2007 Sep 15;23(18):2385-90. doi: 10.1093/bioinformatics/btm360. Epub 2007 Jul 27. Bioinformatics. 2007. PMID: 17660211

4

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis.

Zeeberg BR, Liu H, Kahn AB, Ehler M, Rajapakse VN, Bonner RF, Brown JD, Brooks BP, Larionov VL, Reinhold W, Weinstein JN, Pommier YG. Zeeberg BR, et al. BMC Bioinformatics. 2011 Feb 10;12:52. doi: 10.1186/1471-2105-12-52. BMC Bioinformatics. 2011. PMID: 21310028 Free PMC article.

5

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.

Kahn AB, Ryan MC, Liu H, Zeeberg BR, Jamison DC, Weinstein JN. Kahn AB, et al. BMC Bioinformatics. 2007 Mar 5;8:75. doi: 10.1186/1471-2105-8-75. BMC Bioinformatics. 2007. PMID: 17338820 Free PMC article.

6

SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.

Ryan MC, Zeeberg BR, Caplen NJ, Cleland JA, Kahn AB, Liu H, Weinstein JN. Ryan MC, et al. Among authors: kahn ab. BMC Bioinformatics. 2008 Jul 18;9:313. doi: 10.1186/1471-2105-9-313. BMC Bioinformatics. 2008. PMID: 18638396 Free PMC article.

7

Ontogenomic study of the relationship between number of gene splice variants and GO categorization.

Kahn AB, Zeeberg BR, Ryan MC, Jamison DC, Rockoff DM, Pommier Y, Weinstein JN. Kahn AB, et al. Bioinformatics. 2010 Aug 15;26(16):1945-9. doi: 10.1093/bioinformatics/btq335. Epub 2010 Jul 8. Bioinformatics. 2010. PMID: 20616384 Free PMC article.

8

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma.

Verhaak RG, Tamayo P, Yang JY, Hubbard D, Zhang H, Creighton CJ, Fereday S, Lawrence M, Carter SL, Mermel CH, Kostic AD, Etemadmoghadam D, Saksena G, Cibulskis K, Duraisamy S, Levanon K, Sougnez C, Tsherniak A, Gomez S, Onofrio R, Gabriel S, Chin L, Zhang N, Spellman PT, Zhang Y, Akbani R, Hoadley KA, Kahn A, Köbel M, Huntsman D, Soslow RA, Defazio A, Birrer MJ, Gray JW, Weinstein JN, Bowtell DD, Drapkin R, Mesirov JP, Getz G, Levine DA, Meyerson M; Cancer Genome Atlas Research Network. Verhaak RG, et al. Among authors: kahn a. J Clin Invest. 2013 Jan;123(1):517-25. doi: 10.1172/JCI65833. Epub 2012 Dec 21. J Clin Invest. 2013. PMID: 23257362 Free PMC article. Clinical Trial.

9

Comprehensive molecular portraits of human breast tumours.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Oct 4;490(7418):61-70. doi: 10.1038/nature11412. Epub 2012 Sep 23. Nature. 2012. PMID: 23000897 Free PMC article.

10

The Cancer Genome Atlas Pan-Cancer analysis project.

Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.

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