Blume JE - Search Results

1

Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay.

Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, Shiue L, Clark TA, Blume JE, Ares M Jr. Ni JZ, et al. Among authors: blume je. Genes Dev. 2007 Mar 15;21(6):708-18. doi: 10.1101/gad.1525507. Genes Dev. 2007. PMID: 17369403 Free PMC article.

2

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr. Sugnet CW, et al. Among authors: blume je. PLoS Comput Biol. 2006 Jan;2(1):e4. doi: 10.1371/journal.pcbi.0020004. Epub 2006 Jan 20. PLoS Comput Biol. 2006. PMID: 16424921 Free PMC article.

3

Discovery of tissue-specific exons using comprehensive human exon microarrays.

Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE. Clark TA, et al. Among authors: blume je. Genome Biol. 2007;8(4):R64. doi: 10.1186/gb-2007-8-4-r64. Genome Biol. 2007. PMID: 17456239 Free PMC article.

4

ANOSVA: a statistical method for detecting splice variation from expression data.

Cline MS, Blume J, Cawley S, Clark TA, Hu JS, Lu G, Salomonis N, Wang H, Williams A. Cline MS, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i107-15. doi: 10.1093/bioinformatics/bti1010. Bioinformatics. 2005. PMID: 15961447

5

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.

Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG. Das D, et al. Among authors: blume je. Nucleic Acids Res. 2007;35(14):4845-57. doi: 10.1093/nar/gkm485. Epub 2007 Jul 10. Nucleic Acids Res. 2007. PMID: 17626050 Free PMC article.

6

Heritability of alternative splicing in the human genome.

Kwan T, Benovoy D, Dias C, Gurd S, Serre D, Zuzan H, Clark TA, Schweitzer A, Staples MK, Wang H, Blume JE, Hudson TJ, Sladek R, Majewski J. Kwan T, et al. Among authors: blume je. Genome Res. 2007 Aug;17(8):1210-8. doi: 10.1101/gr.6281007. Genome Res. 2007. PMID: 17671095 Free PMC article.

7

Nova regulates brain-specific splicing to shape the synapse.

Ule J, Ule A, Spencer J, Williams A, Hu JS, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg BR, Kane D, Weinstein JN, Blume J, Darnell RB. Ule J, et al. Nat Genet. 2005 Aug;37(8):844-52. doi: 10.1038/ng1610. Epub 2005 Jul 24. Nat Genet. 2005. PMID: 16041372

8

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Licatalosi DD, Mele A, Fak JJ, Ule J, Kayikci M, Chi SW, Clark TA, Schweitzer AC, Blume JE, Wang X, Darnell JC, Darnell RB. Licatalosi DD, et al. Among authors: blume je. Nature. 2008 Nov 27;456(7221):464-9. doi: 10.1038/nature07488. Epub 2008 Nov 2. Nature. 2008. PMID: 18978773 Free PMC article.

9

Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.

Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zambon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS, Clark TA, Williams A, Blume JE, Samal E, Mercola M, Merrill BJ, Conklin BR. Salomonis N, et al. Among authors: blume je. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10514-9. doi: 10.1073/pnas.0912260107. Epub 2010 May 24. Proc Natl Acad Sci U S A. 2010. PMID: 20498046 Free PMC article.

10

Identification of common genetic variants that account for transcript isoform variation between human populations.

Zhang W, Duan S, Bleibel WK, Wisel SA, Huang RS, Wu X, He L, Clark TA, Chen TX, Schweitzer AC, Blume JE, Dolan ME, Cox NJ. Zhang W, et al. Among authors: blume je. Hum Genet. 2009 Feb;125(1):81-93. doi: 10.1007/s00439-008-0601-x. Epub 2008 Dec 4. Hum Genet. 2009. PMID: 19052777 Free PMC article.

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