Harrigan PR - Search Results

1

Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage.

Sander O, Sing T, Sommer I, Low AJ, Cheung PK, Harrigan PR, Lengauer T, Domingues FS. Sander O, et al. Among authors: harrigan pr. PLoS Comput Biol. 2007 Mar 30;3(3):e58. doi: 10.1371/journal.pcbi.0030058. Epub 2007 Feb 8. PLoS Comput Biol. 2007. PMID: 17397254 Free PMC article.

2

Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.

Sing T, Low AJ, Beerenwinkel N, Sander O, Cheung PK, Domingues FS, Büch J, Däumer M, Kaiser R, Lengauer T, Harrigan PR. Sing T, et al. Among authors: harrigan pr. Antivir Ther. 2007;12(7):1097-106. Antivir Ther. 2007. PMID: 18018768

3

Improved prediction of HIV‐1 coreceptor usage with sequence information from the second hypervariable loop of gp120.

Thielen A, Sichtig N, Kaiser R, Lam J, Harrigan PR, Lengauer T. Thielen A, et al. Among authors: harrigan pr. J Infect Dis. 2010 Nov 1;202(9):1435-43. doi: 10.1086/656600. J Infect Dis. 2010. PMID: 20874088

4

Determining human immunodeficiency virus coreceptor use in a clinical setting: degree of correlation between two phenotypic assays and a bioinformatic model.

Skrabal K, Low AJ, Dong W, Sing T, Cheung PK, Mammano F, Harrigan PR. Skrabal K, et al. Among authors: harrigan pr. J Clin Microbiol. 2007 Feb;45(2):279-84. doi: 10.1128/JCM.01118-06. Epub 2006 Nov 22. J Clin Microbiol. 2007. PMID: 17122004 Free PMC article.

5

Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates.

Low AJ, Dong W, Chan D, Sing T, Swanstrom R, Jensen M, Pillai S, Good B, Harrigan PR. Low AJ, et al. Among authors: harrigan pr. AIDS. 2007 Sep 12;21(14):F17-24. doi: 10.1097/QAD.0b013e3282ef81ea. AIDS. 2007. PMID: 17721088

6

CD4-dependent characteristics of coreceptor use and HIV type 1 V3 sequence in a large population of therapy-naive individuals.

Low AJ, Marchant D, Brumme CJ, Brumme ZL, Dong W, Sing T, Hogg RS, Montaner JS, Gill V, Cheung PK, Harrigan PR. Low AJ, et al. Among authors: harrigan pr. AIDS Res Hum Retroviruses. 2008 Feb;24(2):219-28. doi: 10.1089/aid.2007.0140. AIDS Res Hum Retroviruses. 2008. PMID: 18240966

7

HIV coreceptor phenotyping in the clinical setting.

Low AJ, Swenson LC, Harrigan PR. Low AJ, et al. Among authors: harrigan pr. AIDS Rev. 2008 Jul-Sep;10(3):143-51. AIDS Rev. 2008. PMID: 18820716 Review.

8

Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially.

Thielen A, Lengauer T, Swenson LC, Dong WW, McGovern RA, Lewis M, James I, Heera J, Valdez H, Harrigan PR. Thielen A, et al. Among authors: harrigan pr. Antivir Ther. 2011;16(3):319-28. doi: 10.3851/IMP1769. Antivir Ther. 2011. PMID: 21555814

9

Trofile HIV co-receptor usage assay.

Low AJ, McGovern RA, Harrigan PR. Low AJ, et al. Among authors: harrigan pr. Expert Opin Med Diagn. 2009 Mar;3(2):181-91. doi: 10.1517/17530050802708981. Expert Opin Med Diagn. 2009. PMID: 23485164

10

Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA.

Swenson LC, Moores A, Low AJ, Thielen A, Dong W, Woods C, Jensen MA, Wynhoven B, Chan D, Glascock C, Harrigan PR. Swenson LC, et al. Among authors: harrigan pr. J Acquir Immune Defic Syndr. 2010 Aug;54(5):506-10. doi: 10.1097/QAI.0b013e3181d0558f. J Acquir Immune Defic Syndr. 2010. PMID: 20512044

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