Dopazo J - Search Results

1

Functional profiling and gene expression analysis of chromosomal copy number alterations.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Al-Shahrour F, Dopazo J. Conde L, et al. Among authors: dopazo j. Bioinformation. 2007 Apr 10;1(10):432-5. doi: 10.6026/97320630001432. Bioinformation. 2007. PMID: 17597935 Free PMC article.

2

GEPAS: A web-based resource for microarray gene expression data analysis.

Herrero J, Al-Shahrour F, Díaz-Uriarte R, Mateos A, Vaquerizas JM, Santoyo J, Dopazo J. Herrero J, et al. Among authors: dopazo j. Nucleic Acids Res. 2003 Jul 1;31(13):3461-7. doi: 10.1093/nar/gkg591. Nucleic Acids Res. 2003. PMID: 12824345 Free PMC article.

3

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.

Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Bioinformatics. 2004 Mar 1;20(4):578-80. doi: 10.1093/bioinformatics/btg455. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 14990455

4

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.

Conde L, Vaquerizas JM, Santoyo J, Al-Shahrour F, Ruiz-Llorente S, Robledo M, Dopazo J. Conde L, et al. Among authors: dopazo j. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W242-8. doi: 10.1093/nar/gkh438. Nucleic Acids Res. 2004. PMID: 15215388 Free PMC article.

5

New challenges in gene expression data analysis and the extended GEPAS.

Herrero J, Vaquerizas JM, Al-Shahrour F, Conde L, Mateos A, Díaz-Uriarte JS, Dopazo J. Herrero J, et al. Among authors: dopazo j. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W485-91. doi: 10.1093/nar/gkh421. Nucleic Acids Res. 2004. PMID: 15215434 Free PMC article.

6

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.

Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Bioinformatics. 2005 Jul 1;21(13):2988-93. doi: 10.1093/bioinformatics/bti457. Epub 2005 Apr 19. Bioinformatics. 2005. PMID: 15840702

7

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W460-4. doi: 10.1093/nar/gki456. Nucleic Acids Res. 2005. PMID: 15980512 Free PMC article.

8

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.

Conde L, Vaquerizas JM, Ferrer-Costa C, de la Cruz X, Orozco M, Dopazo J. Conde L, et al. Among authors: dopazo j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W501-5. doi: 10.1093/nar/gki476. Nucleic Acids Res. 2005. PMID: 15980522 Free PMC article.

9

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.

Vaquerizas JM, Conde L, Yankilevich P, Cabezón A, Minguez P, Díaz-Uriarte R, Al-Shahrour F, Herrero J, Dopazo J. Vaquerizas JM, et al. Among authors: dopazo j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W616-20. doi: 10.1093/nar/gki500. Nucleic Acids Res. 2005. PMID: 15980548 Free PMC article.

10

Selective pressures at a codon-level predict deleterious mutations in human disease genes.

Arbiza L, Duchi S, Montaner D, Burguet J, Pantoja-Uceda D, Pineda-Lucena A, Dopazo J, Dopazo H. Arbiza L, et al. Among authors: dopazo j, dopazo h. J Mol Biol. 2006 May 19;358(5):1390-404. doi: 10.1016/j.jmb.2006.02.067. Epub 2006 Mar 15. J Mol Biol. 2006. PMID: 16584746

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