Dubchak I - Search Results

1

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.

Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG. Das D, et al. Among authors: dubchak i. Nucleic Acids Res. 2007;35(14):4845-57. doi: 10.1093/nar/gkm485. Epub 2007 Jul 10. Nucleic Acids Res. 2007. PMID: 17626050 Free PMC article.

2

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons.

Minovitsky S, Gee SL, Schokrpur S, Dubchak I, Conboy JG. Minovitsky S, et al. Among authors: dubchak i. Nucleic Acids Res. 2005 Feb 3;33(2):714-24. doi: 10.1093/nar/gki210. Print 2005. Nucleic Acids Res. 2005. PMID: 15691898 Free PMC article.

3

VISTA Enhancer Browser--a database of tissue-specific human enhancers.

Visel A, Minovitsky S, Dubchak I, Pennacchio LA. Visel A, et al. Among authors: dubchak i. Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92. doi: 10.1093/nar/gkl822. Epub 2006 Nov 27. Nucleic Acids Res. 2007. PMID: 17130149 Free PMC article.

4

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.

Brudno M, Gelfand MS, Spengler S, Zorn M, Dubchak I, Conboy JG. Brudno M, et al. Among authors: dubchak i. Nucleic Acids Res. 2001 Jun 1;29(11):2338-48. doi: 10.1093/nar/29.11.2338. Nucleic Acids Res. 2001. PMID: 11376152 Free PMC article.

5

VISTA: computational tools for comparative genomics.

Frazer KA, Pachter L, Poliakov A, Rubin EM, Dubchak I. Frazer KA, et al. Among authors: dubchak i. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W273-9. doi: 10.1093/nar/gkh458. Nucleic Acids Res. 2004. PMID: 15215394 Free PMC article.

6

Differential domain evolution and complex RNA processing in a family of paralogous EPB41 (protein 4.1) genes facilitate expression of diverse tissue-specific isoforms.

Parra M, Gee S, Chan N, Ryaboy D, Dubchak I, Mohandas N, Gascard PD, Conboy JG. Parra M, et al. Among authors: dubchak i. Genomics. 2004 Oct;84(4):637-46. doi: 10.1016/j.ygeno.2004.06.004. Genomics. 2004. PMID: 15475241

7

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences.

Minovitsky S, Stegmaier P, Kel A, Kondrashov AS, Dubchak I. Minovitsky S, et al. Among authors: dubchak i. BMC Genomics. 2007 Oct 18;8:378. doi: 10.1186/1471-2164-8-378. BMC Genomics. 2007. PMID: 17945028 Free PMC article.

8

Multiple whole-genome alignments without a reference organism.

Dubchak I, Poliakov A, Kislyuk A, Brudno M. Dubchak I, et al. Genome Res. 2009 Apr;19(4):682-9. doi: 10.1101/gr.081778.108. Epub 2009 Jan 28. Genome Res. 2009. PMID: 19176791 Free PMC article.

9

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.

Dubchak I, Munoz M, Poliakov A, Salomonis N, Minovitsky S, Bodmer R, Zambon AC. Dubchak I, et al. Bioinformatics. 2013 Aug 15;29(16):2059-61. doi: 10.1093/bioinformatics/btt318. Epub 2013 Jun 4. Bioinformatics. 2013. PMID: 23736530 Free PMC article.

10

Functionally conserved enhancers with divergent sequences in distant vertebrates.

Yang S, Oksenberg N, Takayama S, Heo SJ, Poliakov A, Ahituv N, Dubchak I, Boffelli D. Yang S, et al. Among authors: dubchak i. BMC Genomics. 2015 Oct 30;16:882. doi: 10.1186/s12864-015-2070-7. BMC Genomics. 2015. PMID: 26519295 Free PMC article.

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