Fukuzawa K - Search Results

1

Visualization analysis of inter-fragment interaction energies of CRP-cAMP-DNA complex based on the fragment molecular orbital method.

Kurisaki I, Fukuzawa K, Komeiji Y, Mochizuki Y, Nakano T, Imada J, Chmielewski A, Rothstein SM, Watanabe H, Tanaka S. Kurisaki I, et al. Among authors: fukuzawa k. Biophys Chem. 2007 Oct;130(1-2):1-9. doi: 10.1016/j.bpc.2007.06.011. Epub 2007 Jul 5. Biophys Chem. 2007. PMID: 17656003

2

Ab initio quantum mechanical study of the binding energies of human estrogen receptor alpha with its ligands: an application of fragment molecular orbital method.

Fukuzawa K, Kitaura K, Uebayasi M, Nakata K, Kaminuma T, Nakano T. Fukuzawa K, et al. J Comput Chem. 2005 Jan 15;26(1):1-10. doi: 10.1002/jcc.20130. J Comput Chem. 2005. PMID: 15521089

3

VISCANA: visualized cluster analysis of protein-ligand interaction based on the ab initio fragment molecular orbital method for virtual ligand screening.

Amari S, Aizawa M, Zhang J, Fukuzawa K, Mochizuki Y, Iwasawa Y, Nakata K, Chuman H, Nakano T. Amari S, et al. Among authors: fukuzawa k. J Chem Inf Model. 2006 Jan-Feb;46(1):221-30. doi: 10.1021/ci050262q. J Chem Inf Model. 2006. PMID: 16426058

4

Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: ab initio fragment molecular orbital study.

Fukuzawa K, Komeiji Y, Mochizuki Y, Kato A, Nakano T, Tanaka S. Fukuzawa K, et al. J Comput Chem. 2006 Jun;27(8):948-60. doi: 10.1002/jcc.20399. J Comput Chem. 2006. PMID: 16586530

5

Molecular interactions between estrogen receptor and its ligand studied by the ab initio fragment molecular orbital method.

Fukuzawa K, Mochizuki Y, Tanaka S, Kitaura K, Nakano T. Fukuzawa K, et al. J Phys Chem B. 2006 Aug 17;110(32):16102-10. doi: 10.1021/jp060770i. J Phys Chem B. 2006. PMID: 16898767

6

Ab initio fragment molecular orbital study of molecular interactions between liganded retinoid X receptor and its coactivator: roles of helix 12 in the coactivator binding mechanism.

Ito M, Fukuzawa K, Mochizuki Y, Nakano T, Tanaka S. Ito M, et al. Among authors: fukuzawa k. J Phys Chem B. 2007 Apr 5;111(13):3525-33. doi: 10.1021/jp070054w. Epub 2007 Mar 9. J Phys Chem B. 2007. PMID: 17388485

7

DNA and estrogen receptor interaction revealed by fragment molecular orbital calculations.

Watanabe T, Inadomi Y, Fukuzawa K, Nakano T, Tanaka S, Nilsson L, Nagashima U. Watanabe T, et al. Among authors: fukuzawa k. J Phys Chem B. 2007 Aug 16;111(32):9621-7. doi: 10.1021/jp071710v. Epub 2007 Jul 25. J Phys Chem B. 2007. PMID: 17649990

8

Ab initio fragment molecular orbital study of molecular interactions between liganded retinoid X receptor and its coactivator; part II: influence of mutations in transcriptional activation function 2 activating domain core on the molecular interactions.

Ito M, Fukuzawa K, Mochizuki Y, Nakano T, Tanaka S. Ito M, et al. Among authors: fukuzawa k. J Phys Chem A. 2008 Mar 13;112(10):1986-98. doi: 10.1021/jp075430r. Epub 2007 Nov 17. J Phys Chem A. 2008. PMID: 18020317

9

Comparison of epitope structures of H3HAs through protein modeling of influenza A virus hemagglutinin: mechanism for selection of antigenic variants in the presence of a monoclonal antibody.

Nakajima S, Nakajima K, Nobusawa E, Zhao J, Tanaka S, Fukuzawa K. Nakajima S, et al. Among authors: fukuzawa k. Microbiol Immunol. 2007;51(12):1179-87. doi: 10.1111/j.1348-0421.2007.tb04013.x. Microbiol Immunol. 2007. PMID: 18094536 Free article.

10

Water-mediated interactions in the CRP-cAMP-DNA complex: does water mediate sequence-specific binding at the DNA primary-kink site?

VanSchouwen BM, Gordon HL, Rothstein SM, Komeiji Y, Fukuzawa K, Tanaka S. VanSchouwen BM, et al. Among authors: fukuzawa k. Comput Biol Chem. 2008 Jun;32(3):149-58. doi: 10.1016/j.compbiolchem.2008.01.001. Epub 2008 Jan 19. Comput Biol Chem. 2008. PMID: 18356111

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