Dixit SB - Search Results

1

CTL recognition of a protective immunodominant influenza A virus nucleoprotein epitope utilizes a highly restricted Vbeta but diverse Valpha repertoire: functional and structural implications.

Zhong W, Dixit SB, Mallis RJ, Arthanari H, Lugovskoy AA, Beveridge DL, Wagner G, Reinherz EL. Zhong W, et al. Among authors: dixit sb. J Mol Biol. 2007 Sep 14;372(2):535-48. doi: 10.1016/j.jmb.2007.06.057. Epub 2007 Jun 27. J Mol Biol. 2007. PMID: 17658550

2

Axis curvature and ligand induced bending in the CAP-DNA oligomers.

Dixit SB, Beveridge DL. Dixit SB, et al. Biophys J. 2005 Jan;88(1):L04-6. doi: 10.1529/biophysj.104.053058. Epub 2004 Nov 19. Biophys J. 2005. PMID: 15556974 Free PMC article.

3

Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction.

Dixit SB, Beveridge DL. Dixit SB, et al. Bioinformatics. 2006 Apr 15;22(8):1007-9. doi: 10.1093/bioinformatics/btl059. Epub 2006 Feb 17. Bioinformatics. 2006. PMID: 16489208

4

Root mean square deviation probability analysis of molecular dynamics trajectories on DNA.

Dixit SB, Ponomarev SY, Beveridge DL. Dixit SB, et al. J Chem Inf Model. 2006 May-Jun;46(3):1084-93. doi: 10.1021/ci0504925. J Chem Inf Model. 2006. PMID: 16711728

5

Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.

Dixit SB, Andrews DQ, Beveridge DL. Dixit SB, et al. Biophys J. 2005 May;88(5):3147-57. doi: 10.1529/biophysj.104.053843. Epub 2005 Feb 24. Biophys J. 2005. PMID: 15731390 Free PMC article.

6

Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.

Dixit SB, Mezei M, Beveridge DL. Dixit SB, et al. J Biosci. 2012 Jul;37(3):399-421. doi: 10.1007/s12038-012-9223-5. J Biosci. 2012. PMID: 22750979

7

Prokaryotic gene finding based on physicochemical characteristics of codons calculated from molecular dynamics simulations.

Singhal P, Jayaram B, Dixit SB, Beveridge DL. Singhal P, et al. Among authors: dixit sb. Biophys J. 2008 Jun;94(11):4173-83. doi: 10.1529/biophysj.107.116392. Epub 2008 Mar 7. Biophys J. 2008. PMID: 18326660 Free PMC article.

8

Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting.

Beveridge DL, Dixit SB, Barreiro G, Thayer KM. Beveridge DL, et al. Among authors: dixit sb. Biopolymers. 2004 Feb 15;73(3):380-403. doi: 10.1002/bip.20019. Biopolymers. 2004. PMID: 14755574 Review.

9

Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy.

Dixit SB, Pitici F, Beveridge DL. Dixit SB, et al. Biopolymers. 2004 Dec 15;75(6):468-79. doi: 10.1002/bip.20157. Biopolymers. 2004. PMID: 15526331

10

Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level.

Jayaram B, McConnell K, Dixit SB, Das A, Beveridge DL. Jayaram B, et al. Among authors: dixit sb. J Comput Chem. 2002 Jan 15;23(1):1-14. doi: 10.1002/jcc.10009. J Comput Chem. 2002. PMID: 11913374

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