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Multi-scale computational modelling in biology and physiology.
Southern J, Pitt-Francis J, Whiteley J, Stokeley D, Kobashi H, Nobes R, Kadooka Y, Gavaghan D. Southern J, et al. Prog Biophys Mol Biol. 2008 Jan-Apr;96(1-3):60-89. doi: 10.1016/j.pbiomolbio.2007.07.019. Epub 2007 Aug 11. Prog Biophys Mol Biol. 2008. PMID: 17888502 Free PMC article. Review.
Chaste: an open source C++ library for computational physiology and biology.
Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, Corrias A, Davit Y, Dunn SJ, Fletcher AG, Harvey DG, Marsh ME, Osborne JM, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan DJ. Mirams GR, et al. Among authors: southern j. PLoS Comput Biol. 2013;9(3):e1002970. doi: 10.1371/journal.pcbi.1002970. Epub 2013 Mar 14. PLoS Comput Biol. 2013. PMID: 23516352 Free PMC article.
cisExpress: motif detection in DNA sequences.
Triska M, Grocutt D, Southern J, Murphy DJ, Tatarinova T. Triska M, et al. Among authors: southern j. Bioinformatics. 2013 Sep 1;29(17):2203-5. doi: 10.1093/bioinformatics/btt366. Epub 2013 Jun 21. Bioinformatics. 2013. PMID: 23793750 Free PMC article.
Exploring "dark-matter" protein folds using deep learning.
Harteveld Z, Van Hall-Beauvais A, Morozova I, Southern J, Goverde C, Georgeon S, Rosset S, Defferrard M, Loukas A, Vandergheynst P, Bronstein MM, Correia BE. Harteveld Z, et al. Among authors: southern j. Cell Syst. 2024 Oct 16;15(10):898-910.e5. doi: 10.1016/j.cels.2024.09.006. Epub 2024 Oct 8. Cell Syst. 2024. PMID: 39383860 Free article.
Estimating the burden of vaccine preventable lower respiratory tract disease in primary care, UK: protocol for a prospective surveillance study (AvonCAP GP2).
Duncan P, Mears R, Begier E, Halvaei SR, Southern J, Porter SB, Hubler R, Oben G, Qian G, Lahuerta M, Davis T, Campling J, Christensen H, Oliver J, Morales-Aza B, Pan K, Gray S, Hyams C, Danon L, Gessner BD, Finn A, Hay AD. Duncan P, et al. Among authors: southern j. BJGP Open. 2024 Oct 2:BJGPO.2024.0129. doi: 10.3399/BJGPO.2024.0129. Online ahead of print. BJGP Open. 2024. PMID: 39251234 Free article.
Non-pharmaceutical interventions for COVID-19 transiently reduced pneumococcal and Haemophilus influenzae carriage in a cross-sectional pediatric cohort in Southampton, UK.
Cleary DW, Campling J, Lahuerta M, Hayford K, Southern J, Gessner BD, Lo SW, Bentley SD, Faust SN, Clarke SC. Cleary DW, et al. Among authors: southern j. Microbiol Spectr. 2024 Aug 6;12(8):e0022424. doi: 10.1128/spectrum.00224-24. Epub 2024 Jul 11. Microbiol Spectr. 2024. PMID: 38990033 Free PMC article.
260 results