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Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT. Glasner JD, et al. Among authors: perna nt. Nucleic Acids Res. 2008 Jan;36(Database issue):D519-23. doi: 10.1093/nar/gkm973. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 17999997 Free PMC article.
ASAP, a systematic annotation package for community analysis of genomes.
Glasner JD, Liss P, Plunkett G 3rd, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B, Blattner FR, Perna NT. Glasner JD, et al. Among authors: perna nt. Nucleic Acids Res. 2003 Jan 1;31(1):147-51. doi: 10.1093/nar/gkg125. Nucleic Acids Res. 2003. PMID: 12519969 Free PMC article.
A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease.
Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, Shetty P, Shi C, Whitmore J, Wong M, Zaremba S, Blattner FR, Perna NT. Greene JM, et al. Among authors: perna nt. Adv Exp Med Biol. 2007;603:28-42. doi: 10.1007/978-0-387-72124-8_4. Adv Exp Med Biol. 2007. PMID: 17966403
GRIL: genome rearrangement and inversion locator.
Darling AE, Mau B, Blattner FR, Perna NT. Darling AE, et al. Among authors: perna nt. Bioinformatics. 2004 Jan 1;20(1):122-4. doi: 10.1093/bioinformatics/btg378. Bioinformatics. 2004. PMID: 14693819
Reordering contigs of draft genomes using the Mauve aligner.
Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. Rissman AI, et al. Among authors: perna nt. Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10. Bioinformatics. 2009. PMID: 19515959 Free PMC article.
65 results