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Single-cell transcriptomics reveals subset-specific metabolic profiles underpinning the bronchial epithelial response to flagellin.
Ramirez-Moral I, Schuurman AR, van Linge CCA, Butler JM, Yu X, de Haan K, van Leeuwen S, de Vos AF, de Jong MD, Vieira Braga FA, van der Poll T. Ramirez-Moral I, et al. Among authors: de haan k. iScience. 2024 Aug 3;27(9):110662. doi: 10.1016/j.isci.2024.110662. eCollection 2024 Sep 20. iScience. 2024. PMID: 39252969 Free PMC article.
Long-term evolution of human seasonal influenza virus A(H3N2) is associated with an increase in polymerase complex activity.
Vigeveno RM, Han AX, de Vries RP, Parker E, de Haan K, van Leeuwen S, Hulme KD, Lauring AS, Te Velthuis AJW, Boons GJ, Fouchier RAM, Russell CA, de Jong MD, Eggink D. Vigeveno RM, et al. Among authors: de haan k. Virus Evol. 2024 May 4;10(1):veae030. doi: 10.1093/ve/veae030. eCollection 2024. Virus Evol. 2024. PMID: 38808037 Free PMC article.
Virtual histological staining of unlabeled autopsy tissue.
Li Y, Pillar N, Li J, Liu T, Wu D, Sun S, Ma G, de Haan K, Huang L, Zhang Y, Hamidi S, Urisman A, Keidar Haran T, Wallace WD, Zuckerman JE, Ozcan A. Li Y, et al. Among authors: de haan k. Nat Commun. 2024 Feb 23;15(1):1684. doi: 10.1038/s41467-024-46077-2. Nat Commun. 2024. PMID: 38396004 Free PMC article.
Determinants of epidemic size and the impacts of lulls in seasonal influenza virus circulation.
de Jong SPJ, Felix Garza ZC, Gibson JC, van Leeuwen S, de Vries RP, Boons GJ, van Hoesel M, de Haan K, van Groeningen LE, Hulme KD, van Willigen HDG, Wynberg E, de Bree GJ, Matser A, Bakker M, van der Hoek L, Prins M, Kootstra NA, Eggink D, Nichols BE, Han AX, de Jong MD, Russell CA. de Jong SPJ, et al. Among authors: de haan k. Nat Commun. 2024 Jan 18;15(1):591. doi: 10.1038/s41467-023-44668-z. Nat Commun. 2024. PMID: 38238318 Free PMC article.
Label-Free Virtual HER2 Immunohistochemical Staining of Breast Tissue using Deep Learning.
Bai B, Wang H, Li Y, de Haan K, Colonnese F, Wan Y, Zuo J, Doan NB, Zhang X, Zhang Y, Li J, Yang X, Dong W, Darrow MA, Kamangar E, Lee HS, Rivenson Y, Ozcan A. Bai B, et al. Among authors: de haan k. BME Front. 2022 Oct 25;2022:9786242. doi: 10.34133/2022/9786242. eCollection 2022. BME Front. 2022. PMID: 37850170 Free PMC article.
Roadmap on Deep Learning for Microscopy.
Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L, Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton ICD, Rubinsztein-Dunlop H, Brunner D, Bai B, Ozcan A, Midtvedt D, Wang H, Sladoje N, Lindblad J, Smith JT, Ochoa M, Barroso M, Intes X, Qiu T, Yu LY, You S, Liu Y, Ziatdinov MA, Kalinin SV, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S, Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl M, de Haan K, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang YW, Pereira JB, Matuszewski D, Kylberg G, Sintorn IM, Caicedo JC, Cimini BA, Bell MAL, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-de-Mariscal E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. Volpe G, et al. Among authors: de haan k. ArXiv [Preprint]. 2023 Mar 7:arXiv:2303.03793v1. ArXiv. 2023. PMID: 36945686 Free PMC article. Preprint.
60 results