Jacobson MP - Search Results

1

Toward better refinement of comparative models: predicting loops in inexact environments.

Sellers BD, Zhu K, Zhao S, Friesner RA, Jacobson MP. Sellers BD, et al. Among authors: jacobson mp. Proteins. 2008 Aug 15;72(3):959-71. doi: 10.1002/prot.21990. Proteins. 2008. PMID: 18300241 Free PMC article.

2

On the role of the crystal environment in determining protein side-chain conformations.

Jacobson MP, Friesner RA, Xiang Z, Honig B. Jacobson MP, et al. J Mol Biol. 2002 Jul 12;320(3):597-608. doi: 10.1016/s0022-2836(02)00470-9. J Mol Biol. 2002. PMID: 12096912

3

Complete protein structure determination using backbone residual dipolar couplings and sidechain rotamer prediction.

Andrec M, Harano Y, Jacobson MP, Friesner RA, Levy RM. Andrec M, et al. Among authors: jacobson mp. J Struct Funct Genomics. 2002;2(2):103-11. doi: 10.1023/a:1020435630054. J Struct Funct Genomics. 2002. PMID: 12836667

4

A hierarchical approach to all-atom protein loop prediction.

Jacobson MP, Pincus DL, Rapp CS, Day TJ, Honig B, Shaw DE, Friesner RA. Jacobson MP, et al. Proteins. 2004 May 1;55(2):351-67. doi: 10.1002/prot.10613. Proteins. 2004. PMID: 15048827

5

High-resolution prediction of protein helix positions and orientations.

Li X, Jacobson MP, Friesner RA. Li X, et al. Among authors: jacobson mp. Proteins. 2004 May 1;55(2):368-82. doi: 10.1002/prot.20014. Proteins. 2004. PMID: 15048828

6

What role do surfaces play in GB models? A new-generation of surface-generalized born model based on a novel gaussian surface for biomolecules.

Yu Z, Jacobson MP, Friesner RA. Yu Z, et al. Among authors: jacobson mp. J Comput Chem. 2006 Jan 15;27(1):72-89. doi: 10.1002/jcc.20307. J Comput Chem. 2006. PMID: 16261581 Free PMC article.

7

Novel procedure for modeling ligand/receptor induced fit effects.

Sherman W, Day T, Jacobson MP, Friesner RA, Farid R. Sherman W, et al. Among authors: jacobson mp. J Med Chem. 2006 Jan 26;49(2):534-53. doi: 10.1021/jm050540c. J Med Chem. 2006. PMID: 16420040

8

Conformational changes in protein loops and helices induced by post-translational phosphorylation.

Groban ES, Narayanan A, Jacobson MP. Groban ES, et al. Among authors: jacobson mp. PLoS Comput Biol. 2006 Apr;2(4):e32. doi: 10.1371/journal.pcbi.0020032. Epub 2006 Apr 21. PLoS Comput Biol. 2006. PMID: 16628247 Free PMC article.

9

Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling.

Li X, Jacobson MP, Zhu K, Zhao S, Friesner RA. Li X, et al. Among authors: jacobson mp. Proteins. 2007 Mar 1;66(4):824-37. doi: 10.1002/prot.21125. Proteins. 2007. PMID: 17154422

10

Prediction of side-chain conformations on protein surfaces.

Xiang Z, Steinbach PJ, Jacobson MP, Friesner RA, Honig B. Xiang Z, et al. Among authors: jacobson mp. Proteins. 2007 Mar 1;66(4):814-23. doi: 10.1002/prot.21099. Proteins. 2007. PMID: 17206724 Free PMC article.

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